Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002246.1 Hibiscus syriacus cultivar Beakdansim tig00004564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58649

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
466--494
2
15.0
2
92
7
51
51
0
0
48
1.00
1149--1204
21
2.6
21
82
2
67
39
17
3
39
1.67
1150--1223
22
3.3
23
77
7
73
37
17
6
37
1.76
8817--8872
29
1.9
29
92
0
94
12
35
30
21
1.90
8888--8960
33
2.2
33
87
0
101
10
38
26
24
1.88
8942--9012
14
5.4
14
83
13
96
7
28
40
23
1.81
8961--9015
24
2.3
24
96
0
101
9
25
41
23
1.83
9055--9112
29
2.0
29
82
0
71
25
27
32
13
1.94
9291--9337
21
2.4
19
80
16
51
36
0
2
61
1.08
14666--14691
2
13.0
2
100
0
52
50
0
0
50
1.00
16086--16111
12
2.2
12
100
0
52
0
23
34
42
1.54
17347--17415
21
3.2
21
83
2
84
47
30
4
17
1.67
20027--20062
18
2.0
18
88
0
54
41
8
2
47
1.48
20045--20214
46
3.5
46
71
18
135
37
9
11
42
1.73
27657--27730
30
2.4
31
82
11
89
56
12
2
28
1.49
30950--31010
31
1.9
32
83
9
81
49
6
9
34
1.62
32323--32383
31
2.0
30
84
6
79
27
19
11
40
1.86
38250--38279
15
2.0
15
93
0
51
46
3
20
30
1.66
40894--40965
38
1.9
36
81
15
85
50
2
0
47
1.15
40912--41008
46
2.0
47
81
13
110
47
3
0
49
1.17
40958--41001
17
2.4
18
81
11
54
45
0
0
54
0.99
41141--41195
30
1.9
27
82
10
65
47
3
3
45
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52394--52454
30
2.0
30
84
6
79
40
14
6
37
1.72
52560--52633
31
2.4
31
88
2
114
31
8
12
48
1.69
53274--53323
23
2.1
24
81
3
57
50
0
4
46
1.20

Tables:   1

The End!