genome.fa.s2248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002248.1 Hibiscus syriacus cultivar Beakdansim tig00004567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59910

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3923--3982	2	31.5	2	90	9	99	51	0	0	48	1.00
5704--5734	15	2.1	15	100	0	62	35	0	38	25	1.56
6829--6871	23	1.9	22	85	4	59	11	18	16	53	1.72
6828--6871	22	1.9	24	86	9	65	11	18	15	54	1.70
9071--9192	30	4.1	30	86	3	158	61	12	11	14	1.57
9071--9201	29	4.4	30	83	8	144	62	11	11	14	1.54
9079--9191	59	1.9	59	85	1	147	61	12	11	15	1.58
9057--9226	30	5.6	31	80	8	93	58	12	12	17	1.63
9787--9831	24	1.9	24	81	4	56	51	11	2	35	1.50
15726--15788	23	3.0	21	81	6	74	23	34	25	15	1.95
18081--18150	35	2.0	35	97	0	131	42	0	32	24	1.55
20655--20690	17	2.1	17	94	0	63	72	0	0	27	0.85
21068--21143	28	2.7	28	91	0	116	28	0	22	48	1.51
21093--21297	28	7.1	28	72	15	141	24	0	29	45	1.54
21126--21297	7	24.6	7	70	11	93	23	0	30	45	1.53
21104--21206	35	2.9	35	80	0	134	24	0	30	45	1.53
21121--21297	56	3.0	56	71	16	178	24	0	30	45	1.54
22352--22704	180	2.0	180	90	2	557	32	17	19	30	1.95
23207--23290	11	7.5	11	78	7	80	28	20	23	27	1.99
23207--23290	23	3.7	23	87	3	118	28	20	23	27	1.99
25049--25089	17	2.4	17	91	0	64	31	12	19	36	1.89
27911--27952	19	2.0	20	82	13	50	47	28	2	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28084--28413	177	1.9	177	93	1	572	35	11	14	38	1.83
34043--34340	134	2.2	133	86	2	416	31	17	18	31	1.95
34359--34775	67	6.6	67	76	12	342	32	18	21	27	1.97
34485--34574	29	3.2	29	70	17	80	32	18	21	27	1.97
34471--34556	27	3.1	27	72	11	84	37	18	16	27	1.92
34471--34815	56	5.8	56	74	14	294	33	18	20	27	1.96
34415--34815	122	3.3	123	87	1	599	32	18	20	27	1.96
34732--34815	27	3.0	29	75	7	100	33	22	16	27	1.96
34717--34802	27	3.1	27	78	6	109	37	20	13	27	1.91
36187--36265	10	8.3	9	71	10	50	15	25	29	30	1.96
36277--36309	17	1.9	17	93	0	57	21	45	21	12	1.84
43474--43545	10	7.4	9	75	9	54	18	23	27	30	1.97
43474--43519	9	4.7	10	76	12	51	15	19	28	36	1.92
43473--43545	29	2.5	31	82	8	89	19	23	27	30	1.98
43564--43615	7	7.6	7	78	4	61	15	26	25	32	1.95
43591--43615	13	1.9	13	100	0	50	16	32	28	24	1.96
55043--55270	114	2.0	114	100	0	456	29	10	22	36	1.88
56676--56714	19	2.0	20	85	9	55	10	23	0	66	1.22

Tables:   1

The End!