genome.fa.s2249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002249.1 Hibiscus syriacus cultivar Beakdansim tig00004569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68538

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2405--2468	17	3.5	19	74	18	73	4	14	29	51	1.62
7837--8012	69	2.6	69	90	0	262	40	18	14	27	1.89
8266--8459	5	38.4	5	90	9	290	38	0	0	61	0.96
21512--21559	10	4.5	11	89	5	64	81	4	12	2	0.93
21512--21560	21	2.3	21	82	6	64	81	4	12	2	0.91
21512--21572	10	6.2	10	75	11	54	81	3	13	1	0.88
21498--21572	14	5.2	13	72	24	53	81	2	13	2	0.91
22859--23887	54	19.5	54	83	6	1154	31	18	27	22	1.97
22859--23804	156	6.0	157	88	5	1213	31	19	27	21	1.97
22859--23887	420	2.4	420	92	2	1663	31	18	27	22	1.97
22859--24223	54	25.6	54	78	12	838	32	18	25	23	1.97
23865--24233	55	6.7	55	92	2	600	34	15	21	27	1.94
29539--29592	27	1.9	29	85	7	76	68	3	7	20	1.30
33072--33270	75	2.6	76	84	3	260	20	24	32	23	1.98
33884--33927	17	2.6	17	85	7	63	56	29	0	13	1.38
33879--33929	9	6.2	8	78	17	52	58	27	0	13	1.36
35860--35899	21	1.9	21	89	0	62	10	25	40	25	1.86
35882--35942	20	2.9	21	87	7	79	18	26	34	21	1.96
41699--41939	96	2.5	98	84	4	317	19	24	31	24	1.98
41776--41831	21	2.7	21	100	0	112	14	23	35	26	1.93
41870--41930	22	2.7	23	92	2	106	16	21	37	24	1.93
43064--43122	3	19.7	3	96	0	109	67	1	0	30	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45351--45415	25	2.5	26	80	14	71	49	6	3	41	1.43
47011--47063	2	26.5	2	100	0	106	50	0	0	49	1.00
48735--48802	16	4.3	16	74	9	68	54	17	8	19	1.68
53930--53975	21	2.1	21	88	4	65	50	2	13	34	1.53
64386--64424	21	1.9	20	85	15	53	25	15	28	30	1.96
66314--66351	2	18.0	2	89	10	58	47	0	5	47	1.24

Tables:   1

The End!