genome.fa.s225.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000225.1 Hibiscus syriacus cultivar Beakdansim tig00000395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64154

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4906--5006	12	8.2	12	70	22	52	38	0	14	46	1.45
4950--5005	19	2.9	20	77	17	64	35	0	17	46	1.49
7755--7798	19	2.4	18	85	7	54	29	15	27	27	1.96
7844--7901	20	2.6	22	86	10	75	31	18	22	27	1.97
8805--8885	32	2.5	34	78	13	82	33	0	16	50	1.45
16775--16824	23	2.2	23	89	3	75	20	34	22	24	1.97
16808--16866	19	3.2	19	90	2	84	22	28	30	18	1.97
22409--22453	5	9.6	5	83	9	51	77	0	2	20	0.87
22535--22593	26	2.1	29	84	9	79	77	1	8	11	1.05
22802--22851	2	25.5	2	82	11	59	54	2	2	42	1.23
22808--22865	23	2.5	23	83	8	73	53	1	5	39	1.33
26102--26131	16	1.9	15	93	6	51	13	0	10	76	1.01
26168--26207	21	1.9	21	90	10	64	47	0	0	52	1.00
27201--27264	27	2.4	27	100	0	128	23	18	23	34	1.96
27228--27699	260	1.8	260	89	0	739	29	15	21	33	1.94
27898--27944	24	2.0	24	87	8	69	57	0	10	31	1.33
28305--28343	16	2.8	13	88	11	51	48	2	7	41	1.45
28320--28478	13	14.2	12	66	24	62	47	8	3	40	1.51
28340--28488	6	22.6	7	65	29	53	46	9	2	41	1.50
28341--28488	21	6.7	22	66	25	73	46	9	2	41	1.50
28321--28489	33	5.2	33	94	2	297	47	8	3	40	1.51
28984--29049	30	2.2	30	91	0	105	10	36	6	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29203--29254	20	2.6	20	96	0	95	38	26	13	21	1.90
29310--29658	20	17.5	20	84	4	418	34	26	18	20	1.95
30341--30387	24	2.0	24	87	8	69	25	14	21	38	1.92
30562--30586	12	2.1	12	100	0	50	72	0	28	0	0.86
32144--32233	14	5.7	14	74	23	81	42	23	25	8	1.83
32136--32250	33	3.5	33	95	0	212	45	20	24	9	1.81
32143--32255	19	6.8	18	72	23	88	43	22	24	9	1.83
32409--32479	33	2.2	33	92	0	115	47	18	22	11	1.80
32861--33054	20	9.6	20	81	6	212	19	19	25	35	1.95
32861--33054	60	3.2	60	82	1	244	19	19	25	35	1.95
33110--33161	20	2.6	20	96	0	95	21	13	26	38	1.90
33376--33423	18	2.7	18	77	6	53	41	0	2	56	1.11
40081--40322	121	2.0	121	91	0	394	36	17	7	37	1.79
42203--42227	2	12.5	2	100	0	50	52	0	0	48	1.00
46984--47031	24	1.9	24	83	8	60	39	27	18	14	1.90
61084--61117	12	2.7	13	95	4	61	70	0	14	14	1.17

Tables:   1

The End!