Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002251.1 Hibiscus syriacus cultivar Beakdansim tig00004577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85879

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2048--2128
39
2.0
40
97
2
155
24
29
13
32
1.94
10555--10588
2
17.5
2
93
6
61
52
0
0
47
1.00
13820--13885
29
2.3
30
84
5
82
16
12
16
54
1.71
17849--17897
20
2.5
20
87
9
66
38
0
4
57
1.18
17845--17897
19
2.7
19
82
5
63
41
0
3
54
1.18
26214--26265
20
2.6
19
79
8
59
65
1
0
32
1.04
26123--26359
120
2.0
118
81
6
264
48
8
6
37
1.58
26134--26359
121
1.9
119
81
4
267
48
8
6
36
1.60
26428--26491
23
2.8
23
77
13
69
65
4
1
28
1.21
27868--27892
2
12.5
2
100
0
50
48
0
0
52
1.00
28160--28941
113
7.0
113
90
2
1026
28
18
15
36
1.92
29628--29840
114
1.9
114
88
0
327
29
20
15
34
1.94
31016--31064
16
2.8
17
81
12
64
48
6
8
36
1.58
31429--31458
10
3.0
10
100
0
60
0
20
0
80
0.72
31417--31492
34
2.2
32
78
13
80
1
19
1
77
0.91
38804--38835
15
2.1
15
94
0
55
46
9
18
25
1.79
42098--42134
13
2.6
15
87
8
51
64
2
5
27
1.28
42762--42813
20
2.6
19
79
8
59
65
1
0
32
1.04
42671--42907
121
2.0
118
83
3
296
46
8
7
37
1.62
42970--43033
23
2.8
23
77
13
69
65
4
1
28
1.21
44420--44468
2
26.0
2
84
12
68
51
0
0
48
1.00
44440--44493
3
17.0
3
92
7
65
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44427--44492
21
3.1
21
80
17
75
57
0
0
42
0.98
44421--44477
27
2.1
27
96
0
105
54
0
0
45
0.99
44420--44483
31
2.0
33
90
6
105
54
0
0
45
0.99
44997--45028
16
1.9
17
93
6
57
37
0
0
62
0.95
45424--45462
2
19.5
2
100
0
78
51
0
48
0
1.00
55463--55491
6
4.8
6
100
0
58
17
34
31
17
1.93
59298--59378
30
2.7
30
96
1
146
37
6
3
53
1.44
60188--60218
16
1.9
16
93
0
53
25
19
16
38
1.92
60435--60478
14
3.2
14
77
6
54
45
6
0
47
1.29
64069--64425
181
2.0
181
98
0
696
53
12
18
15
1.73
85649--85684
18
1.9
19
88
5
56
38
0
0
61
0.96

Tables:   1

The End!