genome.fa.s2252.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002252.1 Hibiscus syriacus cultivar Beakdansim tig00004579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91615

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4626--4680	25	2.2	25	96	0	101	38	10	12	38	1.79
4897--5015	60	2.0	60	85	3	159	26	24	22	26	2.00
6674--6769	39	2.4	40	91	1	149	60	10	5	23	1.50
7162--7217	21	2.7	21	82	0	58	28	17	23	30	1.97
12486--12514	2	14.5	2	100	0	58	48	0	0	51	1.00
19340--19390	25	2.0	27	92	7	88	35	0	1	62	1.06
20270--20313	23	1.9	23	100	0	88	34	18	27	20	1.96
20287--20318	16	2.0	16	93	0	55	34	18	25	21	1.96
20763--20795	17	2.0	17	88	5	50	21	0	12	66	1.23
21715--22018	151	2.0	151	80	9	346	49	5	19	25	1.70
25535--25594	10	6.3	9	77	7	57	30	28	28	13	1.94
32758--32802	7	6.4	7	92	0	72	28	26	26	17	1.98
32799--32826	14	2.0	14	100	0	56	0	21	57	21	1.41
39963--40026	20	3.2	20	82	2	76	50	18	15	15	1.79
40052--40090	20	2.0	20	94	0	69	15	10	20	53	1.70
40058--40097	20	2.0	20	90	0	62	17	12	22	47	1.81
41583--41681	42	2.4	42	87	0	144	27	34	19	19	1.95
42257--42348	21	4.4	21	84	5	123	20	35	18	25	1.95
43832--43893	20	3.1	20	88	0	97	38	22	17	20	1.93
44142--44177	18	2.0	18	88	0	54	19	2	19	58	1.52
46958--47003	24	1.9	24	90	0	74	34	21	19	23	1.96
47130--47163	12	2.8	12	90	0	50	14	0	29	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47758--47795	16	2.5	15	84	12	51	65	0	5	28	1.14
47964--48080	40	2.9	39	74	2	126	37	11	23	27	1.90
47964--48060	20	4.8	20	78	7	81	38	11	22	27	1.89
48053--48122	20	3.5	20	74	16	65	31	14	25	28	1.95
48105--48146	20	2.1	20	90	0	66	35	9	26	28	1.88
49155--49226	23	3.2	23	86	2	101	19	15	11	54	1.70
51676--51700	13	1.9	13	100	0	50	36	16	16	32	1.90
55244--55285	15	2.8	15	82	10	50	38	42	0	19	1.51
56218--56264	21	2.2	21	85	11	60	25	12	0	61	1.31
58515--58549	2	17.5	2	100	0	70	48	0	0	51	1.00
60309--60348	21	1.9	22	90	10	66	12	10	40	37	1.77
60621--60680	30	2.0	30	90	6	95	43	15	6	35	1.72
60793--60850	19	3.0	19	80	12	73	50	12	12	25	1.74
63836--63875	21	1.9	21	84	0	53	27	27	12	32	1.93
64075--64133	29	2.0	30	90	6	93	42	18	5	33	1.72
64503--64553	25	2.1	25	82	10	61	33	3	11	50	1.57
72265--72323	11	6.0	10	76	23	63	79	0	20	0	0.73
72257--72327	26	2.9	23	71	18	63	77	0	22	0	0.77
72266--72327	25	2.3	27	89	8	92	80	0	19	0	0.71
72266--72324	13	4.8	13	78	12	54	81	0	18	0	0.69
72285--72327	11	4.0	11	90	6	70	83	0	16	0	0.64
73495--73690	52	3.8	51	83	7	236	36	17	23	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73516--73690	51	3.4	50	80	10	183	38	18	22	20	1.93
74124--74223	54	1.9	49	88	9	146	34	13	27	26	1.93
75247--75316	22	3.2	22	66	18	65	25	14	31	28	1.95
75244--75315	25	3.2	25	60	32	61	25	13	31	29	1.94
75212--75545	43	8.0	43	86	6	434	26	14	29	28	1.96
75452--75522	35	2.0	36	91	8	119	25	19	29	25	1.99
75579--75728	42	3.6	41	84	2	167	23	21	25	30	1.99
75711--76168	90	5.1	90	88	2	661	27	17	20	34	1.95
75721--76168	179	2.5	180	88	2	677	27	16	20	34	1.95
76159--76266	42	2.6	41	86	4	137	26	20	19	33	1.96
76180--76266	41	2.1	42	89	2	131	26	20	20	32	1.97
90098--90172	3	25.0	3	100	0	150	33	0	33	33	1.58
90171--90207	3	12.7	3	94	5	67	35	0	0	64	0.94

Tables:   1

The End!