Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002253.1 Hibiscus syriacus cultivar Beakdansim tig00004581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59023

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6877--6956
39
2.1
39
80
0
88
21
23
18
36
1.95
6894--6984
39
2.3
39
82
0
110
21
20
17
39
1.92
7267--7301
18
1.9
18
88
0
52
42
2
0
54
1.15
7625--7682
27
2.1
27
87
6
82
32
1
1
63
1.14
7643--7683
13
3.1
13
79
6
55
34
0
2
63
1.08
7637--7739
26
3.8
26
73
13
75
37
1
1
58
1.21
7671--7766
26
3.3
29
76
12
99
37
4
2
56
1.30
7888--7971
27
3.1
28
81
10
77
52
2
5
39
1.39
8261--8292
16
1.9
17
93
6
57
62
0
3
34
1.11
13719--13807
40
2.2
41
82
6
101
51
2
2
43
1.26
17306--17358
17
3.3
16
79
7
54
45
0
7
47
1.31
18205--18258
27
2.0
27
81
0
63
53
1
3
40
1.29
19400--19552
80
1.9
80
84
6
204
37
11
15
35
1.83
24565--24605
5
8.2
5
94
0
73
39
19
0
41
1.52
24639--24678
2
20.0
2
100
0
80
50
0
0
50
1.00
26508--26551
23
2.0
22
95
4
79
50
0
9
40
1.34
28558--28597
22
1.9
20
85
10
53
65
2
2
30
1.19
30603--30653
18
2.9
18
72
19
54
66
1
0
31
1.03
31541--31637
29
3.3
29
97
0
176
27
24
7
40
1.81
33257--33455
21
9.6
21
78
12
189
30
23
22
23
1.99
33257--33455
104
1.9
104
97
0
380
30
23
22
23
1.99
33257--33455
62
3.2
63
80
11
178
30
23
22
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33257--33455
83
2.4
82
81
8
226
30
23
22
23
1.99
33402--33474
20
3.6
20
79
17
96
35
19
21
23
1.96
33400--33481
41
2.0
41
100
0
164
34
19
21
24
1.97
34241--34393
21
7.4
21
65
19
81
32
24
21
21
1.98
34239--34452
41
5.2
41
90
1
320
32
24
20
22
1.98
36062--36120
22
2.5
22
75
8
64
44
1
1
52
1.21
41025--41065
21
2.0
21
100
0
82
29
9
0
60
1.28
45119--45144
9
2.9
9
100
0
52
65
0
0
34
0.93
45097--45151
25
2.2
25
81
9
69
67
1
1
29
1.11
45885--46031
35
4.2
35
88
0
186
42
21
1
35
1.61
49376--49451
37
2.1
37
94
0
134
46
14
17
22
1.84
56391--56445
23
2.4
23
87
0
74
20
21
7
50
1.71
58242--58334
35
2.7
34
74
14
100
43
3
3
50
1.34
58759--58797
13
2.9
13
84
3
51
43
0
5
51
1.24
58759--58815
24
2.4
25
77
11
66
43
0
5
50
1.24

Tables:   1

The End!