genome.fa.s2254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002254.1 Hibiscus syriacus cultivar Beakdansim tig00004584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151455

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183--1709	258	2.0	260	88	5	775	32	11	15	40	1.83
3692--3743	21	2.5	22	87	6	72	26	23	28	21	1.99
7617--7653	18	2.1	18	89	0	56	59	2	0	37	1.12
8315--8346	16	2.0	16	100	0	64	25	6	6	62	1.42
16221--16298	31	2.5	31	89	4	113	52	14	11	21	1.72
24539--24612	21	3.5	21	86	0	94	22	22	16	37	1.93
24602--24674	20	3.7	20	96	0	119	41	21	17	19	1.91
24871--24936	22	3.0	22	90	0	105	24	39	15	21	1.91
25273--25342	20	3.5	20	84	1	97	11	17	20	51	1.75
27212--27348	20	7.5	20	68	21	77	43	19	18	17	1.88
27215--27380	87	1.9	87	89	0	260	45	18	19	16	1.86
27393--27461	20	3.5	20	91	0	111	18	20	24	36	1.95
27393--27471	20	4.0	20	83	3	70	18	18	22	39	1.93
27945--28036	21	4.4	21	69	6	62	21	36	15	26	1.93
29431--29466	14	2.6	14	90	0	54	30	0	22	47	1.52
29608--29703	33	2.8	33	87	3	120	15	23	19	40	1.90
29677--29749	20	3.7	20	92	0	119	17	20	24	36	1.94
29760--29791	14	2.3	14	100	0	64	9	28	28	34	1.88
31544--31585	17	2.5	17	100	0	84	26	19	11	42	1.85
32236--32289	24	2.2	24	93	0	90	40	20	18	20	1.91
33132--33178	20	2.3	20	92	0	76	21	19	27	31	1.97
33165--33238	20	3.7	20	94	0	121	21	20	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33152--33257	40	2.7	40	78	11	135	22	19	24	33	1.97
33444--33520	37	2.1	37	82	4	93	48	2	3	45	1.34
38226--38252	14	1.9	14	100	0	54	44	7	29	18	1.77
40512--40611	53	1.9	52	93	2	173	42	13	0	45	1.43
52172--52239	3	22.0	3	85	5	91	35	0	1	63	1.04
53660--53831	95	1.8	92	81	3	209	39	10	11	38	1.76
55832--55895	14	4.6	14	82	5	69	23	14	7	54	1.65
61404--61595	94	2.0	94	94	0	339	29	14	20	35	1.93
63760--63915	54	2.9	54	94	0	258	37	14	25	23	1.92
64273--64357	22	3.9	22	92	0	125	34	14	14	37	1.86
64753--65305	113	4.9	113	90	1	779	38	15	18	28	1.90
64781--65655	113	7.7	114	82	10	768	39	14	17	28	1.89
65223--65405	101	1.8	100	91	1	303	42	12	18	26	1.86
65318--65655	123	2.8	122	89	1	502	41	14	15	28	1.87
65879--65948	3	22.7	3	88	5	104	35	0	0	64	0.94
67324--67381	27	2.1	27	84	12	75	41	3	0	55	1.17
68316--68355	15	2.7	14	85	11	53	47	27	0	25	1.52
68948--68980	14	2.2	16	89	10	52	30	9	15	45	1.77
70026--70059	14	2.3	15	90	5	52	61	5	8	23	1.47
70361--70407	15	3.2	15	84	3	69	29	0	36	34	1.58
70359--70402	7	6.0	7	81	7	52	36	0	31	31	1.58
70359--70402	22	2.0	23	86	4	63	36	0	31	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70819--70864	20	2.2	21	81	14	60	23	10	2	63	1.38
72088--72142	20	2.8	19	75	5	56	34	12	14	38	1.84
72318--72367	20	2.5	20	87	6	66	44	12	2	42	1.53
75515--75580	31	2.1	32	85	2	89	21	7	12	59	1.57
75753--75797	21	2.2	20	84	4	54	24	0	31	44	1.54
76320--76354	2	18.0	2	94	5	63	48	0	0	51	1.00
77395--77484	31	2.9	31	96	0	162	38	6	11	43	1.67
77509--77551	22	2.0	22	100	0	86	51	13	0	34	1.42
77511--77559	22	2.2	22	88	3	71	55	14	0	30	1.40
77499--77945	54	8.4	54	76	16	359	53	12	0	34	1.39
77531--77893	32	12.4	32	69	26	238	53	13	0	32	1.40
77614--77644	15	2.1	15	93	0	53	70	12	0	16	1.16
77528--77848	131	2.4	132	90	3	484	53	14	0	31	1.41
77698--77771	22	3.2	22	73	19	62	55	16	0	28	1.41
77774--77816	22	2.0	22	100	0	86	51	13	0	34	1.42
77776--77824	22	2.2	22	88	3	71	55	14	0	30	1.40
77828--77930	22	4.5	22	72	7	98	51	9	0	38	1.35
77873--78018	15	9.5	15	82	13	181	51	2	0	46	1.12
77819--77973	69	2.3	65	86	5	204	51	6	0	41	1.27
77872--78018	43	3.5	43	83	9	182	51	2	0	46	1.12
77873--78041	58	3.1	56	79	14	174	50	2	0	46	1.16
78526--78580	21	2.6	21	100	0	110	45	5	0	49	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82247--82278	15	2.1	15	100	0	64	6	6	0	87	0.67
84191--84368	88	2.0	88	97	0	338	34	11	16	37	1.86
88926--89025	27	3.6	27	72	8	76	48	2	17	33	1.58
91367--91512	72	2.0	72	100	0	292	36	17	18	26	1.93
94043--94108	31	2.1	30	86	10	89	69	3	6	21	1.24
94089--94125	17	2.2	16	90	4	56	67	0	2	29	1.04
100408--100455	24	2.1	21	81	11	51	16	37	22	22	1.94
108367--108471	45	2.3	46	88	1	149	31	20	16	32	1.94
114263--114359	44	2.2	44	83	10	119	26	24	19	28	1.99
114351--114402	20	2.6	20	93	0	95	30	28	23	17	1.97
116996--117033	20	1.9	20	94	0	67	31	34	15	18	1.92
117080--117184	45	2.3	46	88	1	149	31	18	16	34	1.93
118139--118241	52	2.0	51	88	5	156	55	0	4	39	1.21
118190--118267	29	2.6	30	84	10	97	56	0	6	37	1.25
118190--118310	64	1.9	61	85	11	165	52	0	5	41	1.25
118416--118473	29	2.1	27	84	12	73	67	0	3	29	1.07
118389--118479	30	3.1	29	84	7	103	62	2	2	32	1.19
121014--121083	27	2.5	28	76	21	76	51	0	0	48	1.00
121025--121081	19	2.9	19	77	12	53	52	0	0	47	1.00
121187--121263	23	3.4	24	74	12	65	51	1	0	46	1.09
121199--121248	21	2.3	23	86	10	70	54	0	0	46	1.00
121250--121295	24	1.9	23	83	16	58	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121800--121885	35	2.5	35	82	0	91	40	22	1	36	1.61
121854--121896	21	2.0	21	95	0	77	46	16	0	37	1.47
122019--122052	16	2.0	18	88	11	54	26	2	5	64	1.30
134461--134527	28	2.3	29	72	10	66	47	14	0	37	1.45
136320--136346	9	3.0	9	100	0	54	55	0	44	0	0.99
136934--136998	30	2.2	29	86	2	85	40	0	0	60	0.97
137942--138064	60	2.0	60	85	3	167	32	20	5	41	1.76
137959--138114	60	2.6	60	81	4	163	33	24	3	37	1.74
138246--138364	60	2.0	60	85	3	159	41	5	21	31	1.77
139894--139929	17	2.1	17	100	0	72	38	0	13	47	1.44
150911--150969	31	1.9	31	92	0	100	44	0	1	54	1.10

Tables:   1

The End!