Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002256.1 Hibiscus syriacus cultivar Beakdansim tig00004588_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73810

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4424--4481
22
2.6
22
94
0
98
20
29
24
25
1.99
6485--7019
262
2.0
263
90
2
844
40
15
11
32
1.83
17542--17596
26
2.1
26
100
0
110
27
0
36
36
1.57
21769--21810
22
1.9
22
85
0
57
23
19
23
33
1.97
33618--33677
28
2.1
29
84
9
79
25
0
1
73
0.93
33704--33766
14
4.8
13
74
20
51
25
1
1
71
1.04
33708--33788
37
2.2
36
78
12
83
22
4
1
71
1.12
33973--34007
16
2.1
17
89
5
54
8
8
2
80
1.01
34076--34124
15
3.5
15
78
10
59
20
2
4
73
1.10
34114--34294
4
45.8
4
66
23
66
20
5
1
72
1.13
34100--34321
18
11.8
18
70
23
106
19
5
1
72
1.13
34199--34349
22
7.1
20
71
20
69
20
4
0
74
1.04
34239--34367
28
4.6
29
74
18
87
19
6
0
72
1.11
34221--34415
85
2.3
82
78
13
209
18
7
0
73
1.08
34086--34349
8
31.0
8
66
17
61
20
5
1
72
1.13
34299--34352
14
3.9
13
80
9
54
16
7
0
75
1.01
34269--34408
56
2.5
54
78
18
144
15
9
0
74
1.11
34270--34408
22
6.2
22
70
20
60
15
9
0
74
1.10
35144--35225
40
2.0
40
84
9
105
40
0
2
57
1.12
41548--41572
2
12.5
2
100
0
50
52
0
0
48
1.00
41658--41741
32
2.7
30
87
3
105
33
20
21
25
1.97
47270--47334
33
2.0
33
93
0
112
40
26
23
10
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49431--49471
21
2.0
21
90
9
68
41
29
9
19
1.83
49545--49575
12
2.6
12
100
0
62
48
35
9
6
1.62
50416--50462
24
2.0
24
91
0
76
31
12
8
46
1.72
51064--51098
17
2.1
17
94
0
61
25
17
22
34
1.96
58667--58708
18
2.4
17
77
14
50
59
2
2
35
1.23
58752--58815
25
2.6
25
78
7
60
50
0
6
43
1.27
62844--62892
19
2.6
19
96
0
89
20
28
6
44
1.75
68163--68194
2
16.0
2
100
0
64
50
0
0
50
1.00
69413--69470
3
20.0
3
83
13
77
31
1
0
67
1.01
69546--69744
25
7.9
25
97
1
371
32
20
16
31
1.94
71645--71681
15
2.4
16
90
4
58
18
0
5
75
0.99

Tables:   1

The End!