Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002257.1 Hibiscus syriacus cultivar Beakdansim tig00004590_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52072
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Found at i:3620 original size:31 final size:30
Alignment explanation
Indices: 3582--3653 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 30
3572 TTTTTCTCCG
*
3582 ATATTTATTGTAAT-GGACATAATTTTTTCTA
1 ATATTTATTATAATAGG-CATAATTTTTT-TA
* *
3613 ATATTTATTATTATAGGCTTAATTTTTTTA
1 ATATTTATTATAATAGGCATAATTTTTTTA
3643 ATATTTATTAT
1 ATATTTATTAT
3654 TAAGGGCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 13 0.35
31 22 0.59
32 2 0.05
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.57
Consensus pattern (30 bp):
ATATTTATTATAATAGGCATAATTTTTTTA
Found at i:3763 original size:26 final size:28
Alignment explanation
Indices: 3734--3787 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
3724 CTAAACATTT
*
3734 TTATTA-AGGGCC-AATTTTTTCAATAC
1 TTATTACAGAGCCTAATTTTTTCAATAC
3760 TTATTATCAGAGCCTAATTTTTTCAATA
1 TTATTA-CAGAGCCTAATTTTTTCAATA
3788 TTTGTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 6 0.25
28 5 0.21
29 13 0.54
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.44
Consensus pattern (28 bp):
TTATTACAGAGCCTAATTTTTTCAATAC
Found at i:15774 original size:2 final size:2
Alignment explanation
Indices: 15767--15793 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15757 TTTATCTTAA
15767 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
15794 ACAGTAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16831 original size:8 final size:8
Alignment explanation
Indices: 16808--16868 Score: 54
Period size: 8 Copynumber: 7.6 Consensus size: 8
16798 GGCCTCCATT
*
16808 TATAATCA
1 TATAATAA
16816 TA-AATAA
1 TATAATAA
16823 TATAATAA
1 TATAATAA
*
16831 TATATTAA
1 TATAATAA
*
16839 TA-CATAA
1 TATAATAA
16846 TATATATATA
1 TATA-ATA-A
*
16856 TATATTAA
1 TATAATAA
16864 TATAA
1 TATAA
16869 CAACTCGGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
7 11 0.26
8 21 0.50
9 5 0.12
10 5 0.12
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (8 bp):
TATAATAA
Found at i:16834 original size:23 final size:25
Alignment explanation
Indices: 16808--16865 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
16798 GGCCTCCATT
*
16808 TATAATCATAAATAATATA-ATA-A
1 TATAATAATAAATAATATATATATA
* *
16831 TATATTAATACATAATATATATATA
1 TATAATAATAAATAATATATATATA
*
16856 TATATTAATA
1 TATAATAATA
16866 TAACAACTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 16 0.53
24 3 0.10
25 11 0.37
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (25 bp):
TATAATAATAAATAATATATATATA
Found at i:16858 original size:25 final size:23
Alignment explanation
Indices: 16819--16865 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 23
16809 ATAATCATAA
16819 ATAATATAATAATATATTAATAC
1 ATAATATAATAATATATTAATAC
16842 ATAATATATATATATATATTAATA
1 ATAATATA-ATA-ATATATTAATA
16866 TAACAACTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
24 3 0.14
25 11 0.50
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
ATAATATAATAATATATTAATAC
Found at i:17403 original size:20 final size:20
Alignment explanation
Indices: 17378--17478 Score: 130
Period size: 20 Copynumber: 5.0 Consensus size: 20
17368 TGAAAGACTG
* * * *
17378 ACAAATGACCCAAAGGATTC
1 ACAAATTACCCGAAGGCTTT
17398 ACAAATTACCCGAAGGCTTT
1 ACAAATTACCCGAAGGCTTT
17418 ACAAATTACCCGAAGGCTTT
1 ACAAATTACCCGAAGGCTTT
* *
17438 ACAAATTACCTGAAGGTTTT
1 ACAAATTACCCGAAGGCTTT
* *
17458 ACAAATGACCCGGAGGCTTT
1 ACAAATTACCCGAAGGCTTT
17478 A
1 A
17479 ATTTTCTAGA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.24
Consensus pattern (20 bp):
ACAAATTACCCGAAGGCTTT
Found at i:22032 original size:29 final size:29
Alignment explanation
Indices: 21987--22148 Score: 179
Period size: 29 Copynumber: 5.7 Consensus size: 29
21977 ACCCGACACA
**
21987 GGTGCTATTTTTGTAATTATTTTTAAAAG
1 GGTGCTATTTTCATAATTATTTTTAAAAG
22016 GGTGCTATTTTCATAATTATTTTTAAAAG
1 GGTGCTATTTTCATAATTATTTTTAAAAG
* *
22045 GGTGCTAGTTTTGA-AATTA-TTTTGAAAG
1 GGTGCTA-TTTTCATAATTATTTTTAAAAG
*
22073 GGTGATATTTTCATAATTATTTTTAAAA-
1 GGTGCTATTTTCATAATTATTTTTAAAAG
* * *
22101 GGTGTTAGTTTT-GTAAATATTTTTAAAAG
1 GGTGCTA-TTTTCATAATTATTTTTAAAAG
* * *
22130 GGTGTTAGTTTCGTAATTA
1 GGTGCTATTTTCATAATTA
22149 ATTAGGGTGC
Statistics
Matches: 115, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
27 5 0.04
28 42 0.37
29 63 0.55
30 5 0.04
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.48
Consensus pattern (29 bp):
GGTGCTATTTTCATAATTATTTTTAAAAG
Found at i:22090 original size:57 final size:57
Alignment explanation
Indices: 21986--22148 Score: 222
Period size: 57 Copynumber: 2.9 Consensus size: 57
21976 GACCCGACAC
* * *
21986 AGGTGCTATTTTTGTAATTATTTTTAAAAGGGTGCTATTTTCATAATTATTTTTAAA
1 AGGTGCTAGTTTTGAAATTATTTTTAAAAGGGTGATATTTTCATAATTATTTTTAAA
*
22043 AGGGTGCTAGTTTTGAAATTA-TTTTGAAAGGGTGATATTTTCATAATTATTTTTAAA
1 A-GGTGCTAGTTTTGAAATTATTTTTAAAAGGGTGATATTTTCATAATTATTTTTAAA
* * * *
22100 AGGTGTTAGTTTTGTAAA-TATTTTTAAAAGGGTGTTAGTTTCGTAATTA
1 AGGTGCTAGTTTTG-AAATTATTTTTAAAAGGGTGATATTTTCATAATTA
22149 ATTAGGGTGC
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
56 14 0.15
57 63 0.67
58 17 0.18
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (57 bp):
AGGTGCTAGTTTTGAAATTATTTTTAAAAGGGTGATATTTTCATAATTATTTTTAAA
Found at i:23095 original size:31 final size:32
Alignment explanation
Indices: 23060--23127 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
23050 TAGGCTATGC
* * *
23060 GGCCCTGAGAT-CATTCTTGGGTAGGCCCTGT
1 GGCCCTAAGATGCATTCTTAGGTAGGCCCCGT
**
23091 GGCCCTAAGATGTGTTCTTAGGTAGGCCCCGT
1 GGCCCTAAGATGCATTCTTAGGTAGGCCCCGT
23123 GGCCC
1 GGCCC
23128 CGAAATCTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
31 10 0.32
32 21 0.68
ACGTcount: A:0.13, C:0.28, G:0.32, T:0.26
Consensus pattern (32 bp):
GGCCCTAAGATGCATTCTTAGGTAGGCCCCGT
Found at i:27175 original size:27 final size:26
Alignment explanation
Indices: 27144--27223 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
27134 TTTACTAATA
27144 ATTTAATATAAATAATTACATAACCAT
1 ATTTAATATAAATAATTA-ATAACCAT
* * *
27171 ATTTAATAGAAAT-ATTAATAATCTT
1 ATTTAATATAAATAATTAATAACCAT
*
27196 ATTATAATATTAAAT-ATTAA-AACTAT
1 ATT-TAATA-TAAATAATTAATAACCAT
27222 AT
1 AT
27224 AGATTAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 9 0.20
26 14 0.32
27 21 0.48
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (26 bp):
ATTTAATATAAATAATTAATAACCAT
Found at i:28503 original size:8 final size:8
Alignment explanation
Indices: 28490--28549 Score: 52
Period size: 8 Copynumber: 7.2 Consensus size: 8
28480 TGTAATCATA
28490 AATAATAT
1 AATAATAT
28498 AATAATAT
1 AATAATAT
*
28506 ATTAATA-
1 AATAATAT
*
28513 CAT-ATAT
1 AATAATAT
28520 AATAATAT
1 AATAATAT
28528 ATATATATAT
1 A-ATA-ATAT
28538 ATATTAATAT
1 A-A-TAATAT
28548 AA
1 AA
28550 CACTCGGACG
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
6 3 0.07
7 3 0.07
8 19 0.44
9 4 0.09
10 12 0.28
11 2 0.05
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (8 bp):
AATAATAT
Found at i:28520 original size:22 final size:20
Alignment explanation
Indices: 28494--28548 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
28484 ATCATAAATA
28494 ATATAATAATATATTAATACAT
1 ATATAATAATATA-T-ATACAT
*
28516 ATATAATAATATATATATAT
1 ATATAATAATATATATACAT
*
28536 ATATATTAATATA
1 ATATAATAATATA
28549 ACACTCGGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 17 0.55
21 1 0.03
22 13 0.42
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
ATATAATAATATATATACAT
Found at i:28548 original size:14 final size:14
Alignment explanation
Indices: 28492--28535 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
28482 TAATCATAAA
28492 TAATATAATAATATAT
1 TAATAT-AT-ATATAT
* *
28508 TAATACATATATAA
1 TAATATATATATAT
28522 TAATATATATATAT
1 TAATATATATATAT
28536 ATATATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 17 0.71
15 2 0.08
16 5 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATATATATATAT
Found at i:33352 original size:35 final size:35
Alignment explanation
Indices: 33279--33353 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
33269 CGTCACTAAC
**
33279 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
*
33314 AGTAAGGCCCTGAGCACACAGCCGAGGAACCTCCA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
33349 AGTAA
1 AGTAA
33354 TCTTCCTCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.29, G:0.28, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
Found at i:33494 original size:23 final size:23
Alignment explanation
Indices: 33432--33521 Score: 108
Period size: 23 Copynumber: 3.8 Consensus size: 23
33422 CATAATTCAA
33432 GTCAAGTATCATATCAGAATCCAG
1 GTCAA-TATCATATCAGAATCCAG
* * *
33456 GTCATGTATCAGATCAGAATCCAT
1 GTCA-ATATCATATCAGAATCCAG
33480 GTCAATATCATATCAGAATCCAG
1 GTCAATATCATATCAGAATCCAG
** *
33503 GTCAGGATCATAACAGAAT
1 GTCAATATCATATCAGAAT
33522 TCAAGTCGGA
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
23 32 0.57
24 24 0.43
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (23 bp):
GTCAATATCATATCAGAATCCAG
Found at i:34689 original size:18 final size:18
Alignment explanation
Indices: 34666--34701 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
34656 CTTCCATCCG
*
34666 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
34684 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
34702 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:36018 original size:8 final size:8
Alignment explanation
Indices: 35978--36054 Score: 63
Period size: 8 Copynumber: 9.5 Consensus size: 8
35968 TCAAAGTTTT
35978 GGTCAACAG
1 GGTCAAC-G
35987 TGGTCAACG
1 -GGTCAACG
35996 CCGGTCAAC-
1 --GGTCAACG
36005 GGTCAACG
1 GGTCAACG
36013 GGTCAACG
1 GGTCAACG
36021 GGT---CG
1 GGTCAACG
*
36026 AGTCAACG
1 GGTCAACG
*
36034 GGTCGATCG
1 GGTC-AACG
36043 GGTCAACG
1 GGTCAACG
36051 GGTC
1 GGTC
36055 GGGTAAACGG
Statistics
Matches: 56, Mismatches: 5, Indels: 14
0.75 0.07 0.19
Matches are distributed among these distances:
5 4 0.07
7 7 0.12
8 23 0.41
9 8 0.14
10 14 0.25
ACGTcount: A:0.22, C:0.26, G:0.36, T:0.16
Consensus pattern (8 bp):
GGTCAACG
Found at i:36018 original size:15 final size:16
Alignment explanation
Indices: 35988--36021 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
35978 GGTCAACAGT
35988 GGTCAACGCCGGTCAAC
1 GGTCAACG-CGGTCAAC
36005 GGTCAACG-GGTCAAC
1 GGTCAACGCGGTCAAC
36020 GG
1 GG
36022 GTCGAGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.24, C:0.29, G:0.35, T:0.12
Consensus pattern (16 bp):
GGTCAACGCGGTCAAC
Found at i:36030 original size:21 final size:22
Alignment explanation
Indices: 36006--36046 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
35996 CCGGTCAACG
36006 GTCAACGGGTC-AACGGGTCGA
1 GTCAACGGGTCGAACGGGTCGA
*
36027 GTCAACGGGTCGATCGGGTC
1 GTCAACGGGTCGAACGGGTC
36047 AACGGGTCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.20, C:0.24, G:0.39, T:0.17
Consensus pattern (22 bp):
GTCAACGGGTCGAACGGGTCGA
Found at i:36047 original size:30 final size:30
Alignment explanation
Indices: 35999--36086 Score: 117
Period size: 30 Copynumber: 3.0 Consensus size: 30
35989 GTCAACGCCG
*
35999 GTCAAC-GGTC-AACGGGTCAACGGGTCGA
1 GTCAACGGGTCGATCGGGTCAACGGGTCGA
*
36027 GTCAACGGGTCGATCGGGTCAACGGGTCGG
1 GTCAACGGGTCGATCGGGTCAACGGGTCGA
* *
36057 GTAAACGGGTCGGGTCGGGTCAACGGGTCG
1 GTCAACGGGTC-GATCGGGTCAACGGGTCG
36087 GGTCGGGTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
28 6 0.11
29 4 0.08
30 26 0.49
31 17 0.32
ACGTcount: A:0.19, C:0.23, G:0.42, T:0.16
Consensus pattern (30 bp):
GTCAACGGGTCGATCGGGTCAACGGGTCGA
Found at i:36078 original size:31 final size:30
Alignment explanation
Indices: 36011--36089 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
36001 CAACGGTCAA
* *
36011 CGGGTCAACGGGTCGAGTCAACGGGTCGAT
1 CGGGTCAACGGGTCGGGTAAACGGGTCGAT
*
36041 CGGGTCAACGGGTCGGGTAAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGTAAACGGGTC-GAT
36072 CGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGT
36090 CGGGTCGTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 25 0.56
31 20 0.44
ACGTcount: A:0.16, C:0.22, G:0.46, T:0.16
Consensus pattern (30 bp):
CGGGTCAACGGGTCGGGTAAACGGGTCGAT
Found at i:36090 original size:13 final size:13
Alignment explanation
Indices: 36011--36072 Score: 70
Period size: 13 Copynumber: 4.5 Consensus size: 13
36001 CAACGGTCAA
36011 CGGGTCAACGGGT
1 CGGGTCAACGGGT
*
36024 CGAGTCAACGGGTCGAT
1 CGGGTCAAC-GG--G-T
36041 CGGGTCAACGGGT
1 CGGGTCAACGGGT
*
36054 CGGGTAAACGGGT
1 CGGGTCAACGGGT
36067 CGGGTC
1 CGGGTC
36073 GGGTCAACGG
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 26 0.63
14 3 0.07
16 3 0.07
17 9 0.22
ACGTcount: A:0.18, C:0.23, G:0.44, T:0.16
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:36095 original size:18 final size:18
Alignment explanation
Indices: 36005--36095 Score: 86
Period size: 18 Copynumber: 5.2 Consensus size: 18
35995 GCCGGTCAAC
36005 GGTCAACGGGTCAACGGGTCG
1 GGTCAACGGGT---CGGGTCG
* *
36026 AGTCAACGGGTC-GATCG
1 GGTCAACGGGTCGGGTCG
36043 GGTCAA-----CGGGTCG
1 GGTCAACGGGTCGGGTCG
*
36056 GGTAAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
36074 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
36092 GGTC
1 GGTC
36096 GTGACCGGTC
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
12 1 0.02
13 9 0.16
17 9 0.16
18 29 0.50
21 10 0.17
ACGTcount: A:0.16, C:0.22, G:0.45, T:0.16
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:37499 original size:43 final size:44
Alignment explanation
Indices: 37430--37520 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 44
37420 TTTCAAAGAC
*
37430 TAAACACTAAAGTAACAATCAACAAATACACCAAACTAACATAT
1 TAAACACTAAAGTAACAAACAACAAATACACCAAACTAACATAT
* * *
37474 TAAA-ACTAAGGTAACAAACATCAAATACATCAAACTAACATAT
1 TAAACACTAAAGTAACAAACAACAAATACACCAAACTAACATAT
37517 TAAA
1 TAAA
37521 TACATTCTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 39 0.91
44 4 0.09
ACGTcount: A:0.57, C:0.20, G:0.03, T:0.20
Consensus pattern (44 bp):
TAAACACTAAAGTAACAAACAACAAATACACCAAACTAACATAT
Found at i:37689 original size:19 final size:19
Alignment explanation
Indices: 37665--37706 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
37655 TTGCTCGCAA
37665 ACTTATCGAGTCGAGTTAG
1 ACTTATCGAGTCGAGTTAG
*
37684 ACTTATCGAGTTGAGTTAG
1 ACTTATCGAGTCGAGTTAG
37703 ACTT
1 ACTT
37707 TACTCGATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (19 bp):
ACTTATCGAGTCGAGTTAG
Done.