Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002258.1 Hibiscus syriacus cultivar Beakdansim tig00004591_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67192
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Found at i:317 original size:2 final size:2
Alignment explanation
Indices: 312--342 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
302 AAAGTAAGAT
*
312 TA TA TA TA TA TA TA TA TA TA TA TA TC TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
343 GTTTTTTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1839 original size:3 final size:3
Alignment explanation
Indices: 1833--1864 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
1823 TTTTATTTGT
1833 TTA TTA TTA TTA TTA TTA TT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1865 ATTTTTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1856 original size:17 final size:16
Alignment explanation
Indices: 1836--1876 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
1826 TATTTGTTTA
*
1836 TTATTATTATTATTATT
1 TTATTATTATTAAT-TT
1853 TTATTATTATTAATTT
1 TTATTATTATTAATTT
1869 TTA-TATTA
1 TTATTATTA
1877 CAGGTCCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.22
16 5 0.22
17 13 0.57
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTATTATTAATTT
Found at i:1875 original size:23 final size:22
Alignment explanation
Indices: 1820--1875 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
1810 AGACACTAGT
*
1820 TTTTTTTATTTGTTTATTATTA
1 TTTTTATATTTGTTTATTATTA
*
1842 TTATTATTATTT-TATTATTATTAA
1 TTTTTA-TATTTGT-TTATTATT-A
1866 TTTTTATATT
1 TTTTTATATT
1876 ACAGGTCCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.18
23 17 0.61
24 6 0.21
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTTATATTTGTTTATTATTA
Found at i:3594 original size:21 final size:22
Alignment explanation
Indices: 3570--3611 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
3560 TCTTACTTTT
3570 ATAAAT-TATATTTATTTTTAG
1 ATAAATGTATATTTATTTTTAG
*
3591 ATAAATGTTTATTTATTTTTA
1 ATAAATGTATATTTATTTTTA
3612 ATATTAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
ATAAATGTATATTTATTTTTAG
Found at i:3677 original size:118 final size:117
Alignment explanation
Indices: 3474--3691 Score: 262
Period size: 117 Copynumber: 1.9 Consensus size: 117
3464 TTATCATATT
* * * *
3474 TAAATATTTATTTATTTTTCAATATTAAGAAAGGGTAGTCTTAAAGCAACTGGATGTCCATTTTC
1 TAAATATTTATTTATTTTTCAATATTAAGAAAGGCTAGTCTTAAAGCAACTAGAAGTCCATTTTA
** *
3539 TGATATTTTTTTAAAAAAATATCTTACTTTTATAAATTATATTTATTTTTAGA
66 TGATATTTTAATAAAAAAATATCTTA-TTTAATAAATTATATTTATTTTTAGA
* * * * *
3592 TAAATGTTTATTTATTTTT-AATATTAAGAATGAGCT-GTCTTAAAGTACCTAGAAG-CCCTTTT
1 TAAATATTTATTTATTTTTCAATATTAAGAAAG-GCTAGTCTTAAAGCAACTAGAAGTCCATTTT
*
3654 ATGATATTTCTAAATAAATAAATATCTTATTTAATAAA
65 ATGATATTT-T-AATAAAAAAATATCTTATTTAATAAA
3692 AATATATATT
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
116 14 0.17
117 36 0.43
118 34 0.40
ACGTcount: A:0.37, C:0.08, G:0.09, T:0.45
Consensus pattern (117 bp):
TAAATATTTATTTATTTTTCAATATTAAGAAAGGCTAGTCTTAAAGCAACTAGAAGTCCATTTTA
TGATATTTTAATAAAAAAATATCTTATTTAATAAATTATATTTATTTTTAGA
Found at i:3698 original size:118 final size:118
Alignment explanation
Indices: 3474--3698 Score: 260
Period size: 118 Copynumber: 1.9 Consensus size: 118
3464 TTATCATATT
* * * *
3474 TAAATATTTATTTATTTTTCAATATTAAGAAAGGGTAGTCTTAAAGCAACTGGATGTCCATTTTC
1 TAAATATTTATTTATTTTTCAATATTAAGAAAGGCTAGTCTTAAAGCAACTAGAAGTCCATTTTA
** * *
3539 TGATATTTTTTTAAAAAAATATCTTACTTTTATAAATTATATTTATTTTTAGA
66 TGATATTTTAATAAAAAAATATCTTACTTTAATAAAATATATTTATTTTTAGA
* * * * *
3592 TAAATGTTTATTTATTTTT-AATATTAAGAATGAGCT-GTCTTAAAGTACCTAGAAG-CCCTTTT
1 TAAATATTTATTTATTTTTCAATATTAAGAAAG-GCTAGTCTTAAAGCAACTAGAAGTCCATTTT
*
3654 ATGATATTTCTAAATAAATAAATATCTTA-TTTAATAAAAATATAT
65 ATGATATTT-T-AATAAAAAAATATCTTACTTTAAT-AAAATATAT
3699 ATTAATATAT
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
116 14 0.16
117 33 0.37
118 42 0.47
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (118 bp):
TAAATATTTATTTATTTTTCAATATTAAGAAAGGCTAGTCTTAAAGCAACTAGAAGTCCATTTTA
TGATATTTTAATAAAAAAATATCTTACTTTAATAAAATATATTTATTTTTAGA
Found at i:8095 original size:19 final size:19
Alignment explanation
Indices: 8051--8098 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
8041 AAGAATATCA
*
8051 TTACAAAGATCATTGAAAC
1 TTACAAGGATCATTGAAAC
8070 TTACAAGGATCATTGAAAC
1 TTACAAGGATCATTGAAAC
8089 TTACAAGGAT
1 TTACAAGGAT
8099 TGGCACGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (19 bp):
TTACAAGGATCATTGAAAC
Found at i:8606 original size:17 final size:17
Alignment explanation
Indices: 8584--8630 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
8574 AAGAAGGAAA
8584 AAAAAAGAGGAAAAAAG
1 AAAAAAGAGGAAAAAAG
*
8601 AAAAAAGAGGAAAAGAG
1 AAAAAAGAGGAAAAAAG
*
8618 GAAAAA-AGGAAAA
1 AAAAAAGAGGAAAA
8631 TTTGAACCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
16 7 0.25
17 21 0.75
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AAAAAAGAGGAAAAAAG
Found at i:13551 original size:73 final size:73
Alignment explanation
Indices: 13432--13686 Score: 438
Period size: 73 Copynumber: 3.5 Consensus size: 73
13422 CTATTTCCAA
13432 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
13497 CTCAAGGT
66 CTCAAGGT
* *
13505 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTTTATTTTAAAG
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGC-TTTTTGATCTTAAAG
*
13570 CCTCAGGGT
65 CCTCAAGGT
* *
13579 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTAAAATC
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
*
13644 CTCTAGGT
66 CTCAAGGT
*
13652 CATCTGTAAGACCTACAGTGCAGGATGTTTTCAAA
1 CATCTGTAAGACCTACAGTGCATGATGTTTTCAAA
13687 TAGTAATTTA
Statistics
Matches: 171, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
73 101 0.59
74 70 0.41
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (73 bp):
CATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
CTCAAGGT
Found at i:13798 original size:37 final size:36
Alignment explanation
Indices: 13691--13817 Score: 128
Period size: 36 Copynumber: 3.5 Consensus size: 36
13681 TTCAAATAGT
*
13691 AATTTATCTCACTTGAGATTGTTTTTCTTAAAACAA
1 AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAA
* * ** * * ***
13727 AATTTGTCTCGCTTGAGACAGTATCACCCGAAACAA
1 AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAA
13763 CAATTTATCTCACTTGAGATTGTTTCTCTTAAAACAA
1 -AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAA
* * *
13800 GATTTGTCTCGCTTGAGA
1 AATTTATCTCACTTGAGA
13818 CAGTTTCACT
Statistics
Matches: 68, Mismatches: 22, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
36 41 0.60
37 27 0.40
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (36 bp):
AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAA
Found at i:13810 original size:73 final size:73
Alignment explanation
Indices: 13691--13826 Score: 245
Period size: 73 Copynumber: 1.9 Consensus size: 73
13681 TTCAAATAGT
*
13691 AATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCACCC
1 AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCACCC
13756 GAAACAAC
66 GAAACAAC
* *
13764 AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAAGATTTGTCTCGCTTGAGACAGTTTCAC
1 AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCAC
13827 TAGAATAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (73 bp):
AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCACCC
GAAACAAC
Found at i:13849 original size:73 final size:73
Alignment explanation
Indices: 13691--13849 Score: 214
Period size: 73 Copynumber: 2.2 Consensus size: 73
13681 TTCAAATAGT
* * *
13691 AATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCACCC
1 AATTTACCTCACTTGAGATTGTTTCTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCACCA
*
13756 GAAACAAC
66 GAAACAAA
* * * *
13764 AATTTATCTCACTTGAGATTGTTTCTCTTAAAACAAGATTTGTCTCGCTTGAGACAGTTTCACTA
1 AATTTACCTCACTTGAGATTGTTTCTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCACCA
13829 GAATA-AAA
66 GAA-ACAAA
13837 AATTT-CCATCACT
1 AATTTACC-TCACT
13850 CGATGGACCA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
72 1 0.01
73 75 0.97
74 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (73 bp):
AATTTACCTCACTTGAGATTGTTTCTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTATCACCA
GAAACAAA
Found at i:14178 original size:112 final size:112
Alignment explanation
Indices: 13981--14186 Score: 342
Period size: 112 Copynumber: 1.8 Consensus size: 112
13971 AGATCAGCAC
** *
13981 CAACATTTCCAGAAGTGTTCATATTGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAAT
1 CAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAAT
*
14046 GAGAATAATTTGTTCAACCTTTTGCTTGAATTCATCACTCGATGGAT
66 GAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCACTCGATGGAT
* *
14093 CAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAGTTCATAA
1 CAACATTTCCAGA-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAA
14157 TGAGAAGAATTTGTTCAACCTTTTGCTTGA
65 TGAGAAGAATTTGTTCAACCTTTTGCTTGA
14187 CGCTATCACA
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
112 60 0.69
113 27 0.31
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (112 bp):
CAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAAT
GAGAAGAATTTGTTCAACCTTTTGCTTGAATTCATCACTCGATGGAT
Found at i:14254 original size:235 final size:233
Alignment explanation
Indices: 13843--14270 Score: 669
Period size: 235 Copynumber: 1.8 Consensus size: 233
13833 AAAAAATTTC
* * * *
13843 CATCACTCGATGGACCAACTTTTCCAGAGGAAGTTCATAATGAGAATAACTCATCTGTAGAGGAA
1 CATCACTCGATGGACCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAA
* **
13908 GGAGAAGTTCAGAATGAGAAGAACTTGTTCAACCTTTTGCTCGATTCTATCCTTAAAGGAGATAG
66 GAAGAAGTTCAGAATGAGAAGAACTTGTTCAACCTTTTGCTCGACGCTATCC-TAAAGGAGATAG
* * *
13973 ATCAGCACCAACATTTCCAGAAGTGTTCATATTGAGAAGAACTCATCTGAAGAAGGAAGAAGAAA
130 ATCAGCACCAACATTTCCAGAAGTGTTCATAATGAAAAGAACTCATCTAAAGAAGGAA-AAGAAA
14038 TTCATAATGAGAATAATTTGTTCAACCTTTTGCTTGAATT
194 TTCATAATGAGAATAATTTGTTCAACCTTTTGCTTGAATT
* *
14078 CATCACTCGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAA
1 CATCACTCGATGGACCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAA
* * *
14143 GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTGACGCTATCAC-AGAAGGAGATA
66 GAAGAAGTTCAGAATGAGAAGAACTTGTTCAACCTTTTGCTCGACGCTATC-CTA-AAGGAGATA
*
14207 GATCAGCATCAACATTTCCAGAAGTGTTCATAATGAAAAGAACTCATCTAAAGAAGGAAAAGAA
129 GATCAGCACCAACATTTCCAGAAGTGTTCATAATGAAAAGAACTCATCTAAAGAAGGAAAAGAA
14271 GAATGAGAAT
Statistics
Matches: 175, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
234 6 0.03
235 168 0.96
236 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (233 bp):
CATCACTCGATGGACCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAA
GAAGAAGTTCAGAATGAGAAGAACTTGTTCAACCTTTTGCTCGACGCTATCCTAAAGGAGATAGA
TCAGCACCAACATTTCCAGAAGTGTTCATAATGAAAAGAACTCATCTAAAGAAGGAAAAGAAATT
CATAATGAGAATAATTTGTTCAACCTTTTGCTTGAATT
Found at i:14659 original size:3 final size:3
Alignment explanation
Indices: 14653--14697 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
14643 ATTTATTTGT
*
14653 TTA TTA TTA TTA TTA TTA CTA TTA -TA TTA TTA TTTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
14698 ATTTTTATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:14705 original size:10 final size:10
Alignment explanation
Indices: 14653--14705 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
14643 ATTTATTTGT
14653 TTATT-ATTA
1 TTATTAATTA
14662 TTATT-ATTA
1 TTATTAATTA
*
14671 CTATTATATTA
1 TTATTA-ATTA
*
14682 TTATTTATTA
1 TTATTAATTA
*
14692 TTATTAATTT
1 TTATTAATTA
14702 TTAT
1 TTAT
14706 ATTACAGGTC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
9 13 0.35
10 16 0.43
11 8 0.22
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (10 bp):
TTATTAATTA
Found at i:14709 original size:33 final size:30
Alignment explanation
Indices: 14636--14709 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 30
14626 ATTTTGCTTT
*
14636 TTTTTATATT-TATTTGTTTATTATTATTA
1 TTTTTATATTATATTTATTTATTATTATTA
*
14665 TTATTACTATTATATTATTATTTATTATTATTAA
1 TTTTTA-TATTATA-T-TTATTTATTATTATT-A
14699 TTTTTATATTA
1 TTTTTATATTA
14710 CAGGTCCATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 5 0.14
30 4 0.11
31 2 0.05
32 1 0.03
33 19 0.51
34 6 0.16
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (30 bp):
TTTTTATATTATATTTATTTATTATTATTA
Found at i:16103 original size:11 final size:11
Alignment explanation
Indices: 16077--16152 Score: 55
Period size: 11 Copynumber: 6.5 Consensus size: 11
16067 TATATTTTAG
*
16077 TTATTTGCAATA
1 TTATTT-CATTA
16089 TTATTTCATTA
1 TTATTTCATTA
*
16100 TTATTT-TTTA
1 TTATTTCATTA
*
16110 TATATGTTTAAATTA
1 T-TA--TTT-CATTA
16125 TTATGTTCATTA
1 TTAT-TTCATTA
*
16137 TTATTTTATTA
1 TTATTTCATTA
16148 TTATT
1 TTATT
16153 ATTACTTAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
10 4 0.08
11 23 0.43
12 15 0.28
13 5 0.09
14 2 0.04
15 4 0.08
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (11 bp):
TTATTTCATTA
Found at i:16371 original size:21 final size:22
Alignment explanation
Indices: 16347--16387 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
16337 TCTTACTTTT
16347 ATAAAT-TATATTTATTTTTAG
1 ATAAATGTATATTTATTTTTAG
*
16368 ATAAATGTTTATTTATTTTT
1 ATAAATGTATATTTATTTTT
16388 TAATATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (22 bp):
ATAAATGTATATTTATTTTTAG
Found at i:18016 original size:39 final size:39
Alignment explanation
Indices: 17973--18462 Score: 493
Period size: 38 Copynumber: 12.5 Consensus size: 39
17963 TTTTGAAAAC
* * * * * *
17973 ATATACATTATATTGTTTTTAAAA-CAATTTTTGAA-AT
1 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAATAT
*
18010 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAT
1 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAATAT
*
18049 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAA-AA
1 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAATAT
*
18087 ATATATAGTATATAGTTTTGAAAATTAGTTTTTAAATATAT
1 ATATATATTATATAGTTTTGAAAATTAGTTTTT-AA-ATAT
*
18128 ATATATATATATATAGTTTTGAAAATTAGTTTTTGAA-AT
1 ATATATAT-TATATAGTTTTGAAAATTAGTTTTTAAATAT
* *
18167 ATATATATTATATAGTTTTGAAAATTA-TTATTT--TTAA
1 ATATATATTATATAGTTTTGAAAATTAGTT-TTTAAATAT
*
18204 ATATACATTATATAGTTTTGAAAATTAGTTTTTTAAA-A-
1 ATATATATTATATAGTTTTGAAAATTAG-TTTTTAAATAT
*
18242 ATATATATCATATAGTTTTGAAAATTAGTTTTTAAAATAT
1 ATATATATTATATAGTTTTGAAAATTAGTTTTT-AAATAT
* * * *** * *
18282 ATATATATATATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAT
1 ATATATAT-TATATA-GTT-T-T-G----AAAATTAGTTTTTAAATAT
18330 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAA-AT
1 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAATAT
*
18368 ATATATATTATATAGTTCTGAAAATTAGTTTTT-AA-A-
1 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAATAT
* * * *
18404 ATATATATTATATGGTTTTGAAAATTATTTTTTAAAAAAAC
1 ATATATATTATATAGTTTTGAAAATTAGTTTTT--AAATAT
18445 ATATATATTATATAGTTT
1 ATATATATTATATAGTTT
18463 AAAAAATATT
Statistics
Matches: 386, Mismatches: 38, Indels: 54
0.81 0.08 0.11
Matches are distributed among these distances:
36 30 0.08
37 58 0.15
38 129 0.33
39 66 0.17
40 11 0.03
41 31 0.08
42 27 0.07
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 6 0.02
48 12 0.03
49 8 0.02
ACGTcount: A:0.42, C:0.01, G:0.08, T:0.49
Consensus pattern (39 bp):
ATATATATTATATAGTTTTGAAAATTAGTTTTTAAATAT
Found at i:18230 original size:17 final size:17
Alignment explanation
Indices: 18173--18230 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
18163 AAATATATAT
18173 ATTATATAGTTTTGAAA
1 ATTATATAGTTTTGAAA
* *
18190 ATTAT-TATTTTTAAATATA
1 ATTATATAGTTTT-GA-A-A
18209 CATTATATAGTTTTGAAA
1 -ATTATATAGTTTTGAAA
18227 ATTA
1 ATTA
18231 GTTTTTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
16 6 0.19
17 10 0.31
18 2 0.06
19 2 0.06
20 6 0.19
21 6 0.19
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (17 bp):
ATTATATAGTTTTGAAA
Found at i:18279 original size:88 final size:89
Alignment explanation
Indices: 18179--18381 Score: 304
Period size: 88 Copynumber: 2.3 Consensus size: 89
18169 ATATATTATA
* *
18179 TAGTTTTGAAAATTAT-TATTTTTAAATATACATTATATAGTTTTGAAAATTAGTTTTTTAAAA-
1 TAGTTTTTAAAATTATATATTTATAAATATACATTATATAGTTTTGAAAATTAG-TTTTTAAAAT
18242 ATATATATCATATAGTTTTGAAAAT
65 ATATATATCATATAGTTTTGAAAAT
* * *
18267 TAGTTTTTAAAA-TATATATATATATATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
1 TAGTTTTTAAAATTATATATTTATAAATATACATTATATAGTTTTGAAAATTAGTTTTTAAAATA
*
18331 TATATATTATATAGTTTTGAAAAT
66 TATATATCATATAGTTTTGAAAAT
18355 TAGTTTTTAAAATATATATATTATATA
1 TAGTTTTTAAAAT-TATATATT-TATA
18382 GTTCTGAAAA
Statistics
Matches: 103, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
87 12 0.12
88 80 0.78
90 7 0.07
91 4 0.04
ACGTcount: A:0.42, C:0.01, G:0.07, T:0.50
Consensus pattern (89 bp):
TAGTTTTTAAAATTATATATTTATAAATATACATTATATAGTTTTGAAAATTAGTTTTTAAAATA
TATATATCATATAGTTTTGAAAAT
Found at i:18305 original size:50 final size:49
Alignment explanation
Indices: 18242--18343 Score: 186
Period size: 50 Copynumber: 2.1 Consensus size: 49
18232 TTTTTTAAAA
18242 ATATATATCATATAGTTTTGAAAATTAGTTTTTAAAATATATATATATAT
1 ATATATATCATATAGTTTTGAAAATTAGTTTTTAAAATATATATAT-TAT
*
18292 ATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATATATTAT
1 ATATATATCATATAGTTTTGAAAATTAGTTTTTAAAATATATATATTAT
18341 ATA
1 ATA
18344 GTTTTGAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 6 0.12
50 45 0.88
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (49 bp):
ATATATATCATATAGTTTTGAAAATTAGTTTTTAAAATATATATATTAT
Found at i:18486 original size:14 final size:14
Alignment explanation
Indices: 18469--18516 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
18459 GTTTAAAAAA
18469 TATTTTTCTTTATT
1 TATTTTTCTTTATT
18483 TATTTTTCTTTATT
1 TATTTTTCTTTATT
*
18497 TCATTTATTATTTA-T
1 T-ATTT-TTCTTTATT
18512 TATTT
1 TATTT
18517 CTTTGTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 19 0.61
15 6 0.19
16 6 0.19
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (14 bp):
TATTTTTCTTTATT
Found at i:18504 original size:19 final size:19
Alignment explanation
Indices: 18480--18528 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
18470 ATTTTTCTTT
18480 ATTTATTTTTCTTTATTTC
1 ATTTATTTTTCTTTATTTC
*
18499 ATTTATTATTT-ATTATTTC
1 ATTTATT-TTTCTTTATTTC
*
18518 -TTTGTTTTTCT
1 ATTTATTTTTCT
18529 CGTTTCAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 3 0.12
18 5 0.20
19 14 0.56
20 3 0.12
ACGTcount: A:0.16, C:0.08, G:0.02, T:0.73
Consensus pattern (19 bp):
ATTTATTTTTCTTTATTTC
Found at i:23769 original size:84 final size:84
Alignment explanation
Indices: 23635--24819 Score: 956
Period size: 84 Copynumber: 14.2 Consensus size: 84
23625 AACATAACTC
* *
23635 AAGGGTTGTCTGTCATCC-AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
** *
23699 CAATATAGCTCAAGGCAAG
66 CAGCATAACTCAAGGCAAG
* * ** * * * * * *
23718 AAGGGCTATTTGTCAATAAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCGCAGCGTTTG
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * * *
23783 GAGCATAGCTTAAGTCAAG
66 CAGCATAACTCAAGGCAAG
* * * *
23802 AAGGGTTATCTG----CCAAAGACCCTCGAGTTCGATTACACTTAGCTTCAAGGGCACATCATTT
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAA-GGCACATCATTT
* *
23863 ACAACATAACTCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
* * * * *
23883 AAGGGTTATTTATC-ACCAAAAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCATATCATTT
1 AAGGGTTATCTGTCAACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
* * * * *
23947 GCAGTATAACTTAAGTCGAG
65 ACAGCATAACTCAAGGCAAG
** * *
23967 AAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAATGCACATCATTTA
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
** * * *
24032 CAGCATGGCTTAAGTCGAG
66 CAGCATAACTCAAGGCAAG
** * ** * * * * * * *
24051 AAGGGTGGGGT-TATCTGCCAAAGGCCCTT-AAGTTCAATTACACTCAACTTCAAGGGCTCATCA
1 AAGGGT--TATCTGTCAACCAAA-GACCTTCGAGTTCGACTACACTCAGCTCCAA-GGCACATCA
* *
24114 TTTACAACATAACTCAAGGCTAG
62 TTTACAGCATAACTCAAGGCAAG
* * * *
24137 AAGAGTTATCTGTC-ACCAAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
1 AAGGGTTATCTGTCAACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
** *
24201 GTAGCATAACTTAAGGCTAA-
65 ACAGCATAACTCAAGGC-AAG
* * * * *
24221 AAGGGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTTAGCTCCAAGGCACATCATTTA
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * *
24286 CAGCATAGCTTAAGTCAAG
66 CAGCATAACTCAAGGCAAG
* * * * ** *
24305 AAGGGCTATCTG----CCAAAGACCCTCGAGTTTGATTACACTCAGCTTTGAGGGCACATCATTT
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCATTT
* *
24366 ACAGCATAAATCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
* * * *
24386 AAGGGTTATCTATC-ACCAAAAGACCTTCGAGTTCGACTACACTCATCTCCGAGGCATATCATTT
1 AAGGGTTATCTGTCAACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
** * *
24450 GTAACATAACTCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
* * * * * *
24470 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTGCGCTCAGCTGCAAGGCACATTATTTG
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * *
24535 CAGCATAACTTAAGTCGAG
66 CAGCATAACTCAAGGCAAG
** * * * *
24554 AAGGCCTATCTG----CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTT
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCATTT
* *
24615 ACAACATAACTCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
* * * * * *
24635 AAGGGTTATCTGTCAA-CAAAGACCTGCGAGTTCGACTGCGCTTAGCTCTAAGGCACATCATTTG
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * * *
24699 CAGCATAGCTTAAGTCGAG
66 CAGCATAACTCAAGGCAAG
* * * *
24718 AAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGATTACACTCAGCT-CAGAGGCAAATCAAAT
1 AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCA-AGGCACATC--AT
* *
24782 TTACAACATAGCTCAAGTG-AAG
63 TTACAGCATAACTCAAG-GCAAG
* *
24804 AAGGGCTATCTATCAA
1 AAGGGTTATCTGTCAA
24820 TAAATTTGTC
Statistics
Matches: 869, Mismatches: 200, Indels: 63
0.77 0.18 0.06
Matches are distributed among these distances:
80 80 0.09
81 109 0.13
83 58 0.07
84 441 0.51
85 114 0.13
86 67 0.08
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (84 bp):
AAGGGTTATCTGTCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
CAGCATAACTCAAGGCAAG
Found at i:24460 original size:249 final size:249
Alignment explanation
Indices: 23653--24814 Score: 1509
Period size: 249 Copynumber: 4.6 Consensus size: 249
23643 TCTGTCATCC
* * * ** * * *
23653 AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTACAATATAGCTCAAGGCAAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* * * ** * * * * *
23718 AAGGGCTATTTGTCAATAAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCGCAGCGTTTG
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* * *
23783 GAGCATAGCTTAAGTCAAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGCTTC
131 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
*
23848 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATTTATCACCAA
196 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * *
23902 AAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCATATCATTTGCAGTATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* *
23967 AAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAATGCACATCATTTA
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* * * * ** *
24032 CAGCATGGCTTAAGTCGAGAAGGGTGGGGTTATCTGCCAAAGGCCCTTAAGTTCAATTACACTCA
131 CAGCATAGCTTAAGTCAAGAA-----GGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCA
* * * *
24097 ACTTCAAGGGCTCATCATTTACAACATAACTCAAGGCTAGAAGAGTTATCTGTCACCAA
191 GCTTCAAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * * *
24156 AAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGTAGCATAACTTAAGGCTAA
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* * *
24221 AAGGGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTTAGCTCCAAGGCACATCATTTA
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* *
24286 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTACACTCAGCTTT
131 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
* * *
24351 GAGGGCACATCATTTACAGCATAAATCAAGGCTAGAAGGGTTATCTATCACCAA
196 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * * * * * *
24405 AAGACCTTCGAGTTCGACTACACTCATCTCCGAGGCATATCATTTGTAACATAACTCAAGGCTAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* * * *
24470 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTGCGCTCAGCTGCAAGGCACATTATTTG
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* * *
24535 CAGCATAACTTAAGTCGAGAAGGCCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
131 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
* * *
24600 GAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTGTCAAC-A
196 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * * * * * *
24653 AAGACCTGCGAGTTCGACTGCGCTTAGCTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* * * *
24718 AAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGATTACACTCAGCT-CAGAGGCAAATCAAAT
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCA-AGGCACATC--AT
* * *
24782 TTACAACATAGCTCAAGTGAAGAAGGGCTATCT
128 TTACAGCATAGCTTAAGTCAAGAAGGGCTATCT
24815 ATCAATAAAT
Statistics
Matches: 793, Mismatches: 112, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
247 2 0.00
248 103 0.13
249 435 0.55
250 28 0.04
254 225 0.28
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (249 bp):
AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
Found at i:24623 original size:165 final size:164
Alignment explanation
Indices: 23635--24798 Score: 880
Period size: 165 Copynumber: 7.0 Consensus size: 164
23625 AACATAACTC
* * * * *
23635 AAGGGTTGTCTGTCATCC-AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
** * * * * * * * * *
23699 CAATATAGCTCAAGGCAAGAAGGGCTATTTGTCAATAAAAGACCTTTGAGTTCGACTACGCTCAG
66 CAGCATAACTTAAGTCGAGAAGGGTTATCTG-C---CAAAGACCTTCGAGTTCGACTACACTCAG
* * * * ** * * * * *
23764 CTCCAAGGCGCAGCGTTTGGAGCATAGCTTAAGTCAAG
127 CTCCAGGGCACATCATTTACAACATAACTCAAGGCTAG
* * * * *
23802 AAGGGTTATCTG----CCAAAGACCCTCGAGTTCGATTACACTTAGCTTCAAGGGCACATCATTT
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTT
* * * * * * * * *
23863 ACAACATAACTCAAGGCTAGAAGGGTTATTTATCACCAAAAGACCTTCGAGTTCAACTACGCTCA
65 GCAGCATAACTTAAGTCGAGAAGGGTTA--TCT-GCC-AAAGACCTTCGAGTTCGACTACACTCA
* * * ** * * *
23928 GCTCCAAGGCATATCATTTGCAGTATAACTTAAGTCGAG
126 GCTCCAGGGCACATCATTTACAACATAACTCAAGGCTAG
* * *
23967 AAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAATGCACATCATTTA
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
** * * * *
24032 CAGCATGGCTTAAGTCGAGAAGGGTGGGGTTATCTGCCAAAGGCCCTT-AAGTTCAATTACACTC
66 CAGCATAACTTAAGTCGAGAA-----GGGTTATCTGCCAAA-GACCTTCGAGTTCGACTACACTC
* * *
24096 AACTTCAAGGGCTCATCATTTACAACATAACTCAAGGCTAG
125 AGC-TCCAGGGCACATCATTTACAACATAACTCAAGGCTAG
* * * *
24137 AAGAGTTATCTGTC-ACCAAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCATATCATTT
1 AAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * * * * *
24201 GTAGCATAACTTAAGGCTAAAAGGGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTTA
65 GCAGCATAACTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCTTCGAGTTCGACTACACTCA
* * * * * *
24266 GCTCCAAGGCACATCATTTACAGCATAGCTTAAGTCAAG
126 GCTCCAGGGCACATCATTTACAACATAACTCAAGGCTAG
* * * * * ** *
24305 AAGGGCTATCTG----CCAAAGACCCTCGAGTTTGATTACACTCAGCTTTGAGGGCACATCATTT
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTT
* * * * * *
24366 ACAGCATAAATCAAGGCTAGAAGGGTTATCTATCACCAAAAGACCTTCGAGTTCGACTACACTCA
65 GCAGCATAACTTAAGTCGAGAAGGGTTATC--T-GCC-AAAGACCTTCGAGTTCGACTACACTCA
* * **
24431 TCTCC-GAGGCATATCATTTGTAACATAACTCAAGGCTAG
126 GCTCCAG-GGCACATCATTTACAACATAACTCAAGGCTAG
* * *
24470 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTGCGCTCAGCTGCAAGGCACATTATTTG
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
** * *
24535 CAGCATAACTTAAGTCGAGAAGGCCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
66 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGACTACACTCAGC-TC
*
24600 GAGGGCACATCATTTACAACATAACTCAAGGCTAG
130 CAGGGCACATCATTTACAACATAACTCAAGGCTAG
* * * * *
24635 AAGGGTTATCTGTCAA-CAAAGACCTGCGAGTTCGACTGCGCTTAGCTCTAAGGCACATCATTTG
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
* * *
24699 CAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGATTACACTCAG
66 CAGCATAACTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCTTCGAGTTCGACTACACTCAG
* *
24764 CT-CAGAGGCAAATCAAATTTACAACATAGCTCAAG
127 CTCCAG-GGCACATC--ATTTACAACATAACTCAAG
24799 TGAAGAAGGG
Statistics
Matches: 807, Mismatches: 148, Indels: 82
0.78 0.14 0.08
Matches are distributed among these distances:
163 2 0.00
164 153 0.19
165 262 0.32
166 4 0.00
167 23 0.03
168 137 0.17
169 115 0.14
170 103 0.13
171 2 0.00
173 6 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (164 bp):
AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTTCGACTACACTCAGCTCC
AGGGCACATCATTTACAACATAACTCAAGGCTAG
Found at i:25487 original size:37 final size:38
Alignment explanation
Indices: 25362--25911 Score: 698
Period size: 38 Copynumber: 14.6 Consensus size: 38
25352 CGTATATATC
* * *
25362 TATATATTATATAG-TTTGCAAA-CAGTGTTTGAAAATA
1 TATATATTATATAGTTTTGAAAATTAGT-TTTTAAAATA
* ** * *
25399 TGTATATAATATATAGTCTTT-AAAAAAACATTTTTGAAAACA
1 --TATATATTATATAGT-TTTGAAAATTA-GTTTTT-AAAATA
* * *
25441 TATACATTATATAGTTTTGAAAA-TAATTTTTGAAATA
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
25478 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAAATA
1 TATATATTATATAGTTTTGAAAATTAGTTTTT-AAAATA
*
25517 TATATATTATATAGTTTTTAAAATTAGTTTTTAAAAATA
1 TATATATTATATAGTTTTGAAAATTAGTTTTT-AAAATA
*
25556 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAA
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
* **
25594 TATATATTATATAGTTTTCAAAATTAGTTTTCGAAATA
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
25632 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAA-A
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
*
25669 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAA
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
25707 TATA-ATTATATAG-TTTG-AAATTAGTTTTTAAAA-A
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
*
25741 -ATATA-TATATATTTTTGAAAATTAGTTTTT-AAA-A
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
25775 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
25813 TATATATTATATAGTTTTGAAAATTAGTTTTT-AAA-A
1 TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
* * * *
25849 TATATATTATATGGTTTTTAAAATTATTTTTTTAAAAACA
1 TATATATTATATAGTTTTGAAAATTA-GTTTTT-AAAATA
*
25889 TATATATTATATAGTTTTAAAAA
1 TATATATTATATAGTTTTGAAAA
25912 AACATTTTTC
Statistics
Matches: 460, Mismatches: 31, Indels: 39
0.87 0.06 0.07
Matches are distributed among these distances:
33 9 0.02
34 10 0.02
35 33 0.07
36 53 0.12
37 83 0.18
38 123 0.27
39 94 0.20
40 42 0.09
41 7 0.02
42 6 0.01
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.47
Consensus pattern (38 bp):
TATATATTATATAGTTTTGAAAATTAGTTTTTAAAATA
Found at i:28110 original size:84 final size:84
Alignment explanation
Indices: 27976--29155 Score: 986
Period size: 84 Copynumber: 14.1 Consensus size: 84
27966 AACATAACTC
* * *
27976 AAGGGTTGTCTGTCATCC-AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
** *
28040 CAATATAGCTCAAGGCAAG
66 CAGCATAACTCAAGGCAAG
* * ** * * * * * *
28059 AAGGGCTATTTGCCAATAAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCGCAGCGTTTG
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * * *
28124 GAGCATAGCTTAAGTCAAG
66 CAGCATAACTCAAGGCAAG
* * * *
28143 AAGGGTTATCTG----CCAAAGACCCTCGAGTTCGATTACACTTAGCTTCAAGGGCACATCATTT
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAA-GGCACATCATTT
* *
28204 ACAACATAACTCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
* ** * * *
28224 AAGGGTTATTTATC-ACCAAAAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCATATCATTT
1 AAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
* * * * *
28288 GCAGTATAACTTAAGTCGAG
65 ACAGCATAACTCAAGGCAAG
* *
28308 AAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
** * * *
28373 CAGCATGGCTTAAGTCGAG
66 CAGCATAACTCAAGGCAAG
* * * * * * * *
28392 AAGGGTGGGGTTATCTGCC-A--AAGGCCCTT-AAGTTCAATTACACTCAACTTCAAGGGCTCAT
1 AA-----GGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAA-GGCACAT
* *
28453 CATTTACAACATAACTCAAGGCTAG
60 CATTTACAGCATAACTCAAGGCAAG
* * * *
28478 AAGAGTTATCTGTC-ACCAAAAGACCTTCAAGTTCGACTACACTCAGCTCCAAGGCATATCATTT
1 AAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
** *
28542 GTAGCATAACTTAAGGCTAA-
65 ACAGCATAACTCAAGGC-AAG
* * *
28562 AAGGGTTATCTGCCAACCAAAGACCTTCAAGTTCGACTACGCTTAGCTCCAAGGCACATCATTTA
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * * *
28627 CAACATAGCTTAAGTCAAG
66 CAGCATAACTCAAGGCAAG
* * * * ** *
28646 AAGGGCTATCTG----CCAAAGACCCTCGAGTTTGATTACACTCAGCTTTGAGGGCACATCATTT
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCATTT
* *
28707 ACAGCATAAATCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
** * * *
28727 AAGGGTTATCTATC-ACCAAAAGACCTTCGAGTTCGACTACACTCATCTCCGAGGCATATCATTT
1 AAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
* * *
28791 GCAACATAACTCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
* * * * *
28811 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTGCGCTCAGCTGCAAGGCACATTATTTG
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * *
28876 CAGCATAACTTAAGTCGAG
66 CAGCATAACTCAAGGCAAG
** * * * *
28895 AAGGCCTATCTG----CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTT
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCATTT
*
28956 ACAGCATAACTCAAGGCTAG
65 ACAGCATAACTCAAGGCAAG
* * * * * * *
28976 AAGGGTTATCTGTCAA-CAAAGACCTGCGAGTTCGACTGCGCTTAGCTCTAAGGCACATCATTTG
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
* * * *
29040 CAGCATAGCTTAAGTCGAG
66 CAGCATAACTCAAGGCAAG
* * *
29059 AAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGATTACACTCAGCT-CAGAGGCAAATCAAAT
1 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCA-AGGCACATC--AT
* *
29123 TTACAACATAGCTCAAGTG-AAG
63 TTACAGCATAACTCAAG-GCAAG
*
29145 AAGGGCTATCT
1 AAGGGTTATCT
29156 ATCAATAAAT
Statistics
Matches: 873, Mismatches: 188, Indels: 69
0.77 0.17 0.06
Matches are distributed among these distances:
80 80 0.09
81 120 0.14
83 58 0.07
84 439 0.50
85 101 0.12
86 63 0.07
88 1 0.00
89 11 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (84 bp):
AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTA
CAGCATAACTCAAGGCAAG
Found at i:28801 original size:249 final size:249
Alignment explanation
Indices: 27994--29155 Score: 1527
Period size: 249 Copynumber: 4.6 Consensus size: 249
27984 TCTGTCATCC
* * ** * * *
27994 AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTACAATATAGCTCAAGGCAAG
1 AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* * ** * * * * *
28059 AAGGGCTATTTGCCAATAAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCGCAGCGTTTG
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* * *
28124 GAGCATAGCTTAAGTCAAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGCTTC
131 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
*
28189 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATTTATCACCAA
196 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * * *
28243 AAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCATATCATTTGCAGTATAACTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
*
28308 AAGGGTTATCTACCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* * * * ** *
28373 CAGCATGGCTTAAGTCGAGAAGGGTGGGGTTATCTGCCAAAGGCCCTTAAGTTCAATTACACTCA
131 CAGCATAGCTTAAGTCAAGAA-----GGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCA
* * * *
28438 ACTTCAAGGGCTCATCATTTACAACATAACTCAAGGCTAGAAGAGTTATCTGTCACCAA
191 GCTTCAAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * * *
28497 AAGACCTTCAAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGTAGCATAACTTAAGGCTAA
1 AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* *
28562 AAGGGTTATCTGCCAACCAAAGACCTTCAAGTTCGACTACGCTTAGCTCCAAGGCACATCATTTA
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* * *
28627 CAACATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTACACTCAGCTTT
131 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
* * *
28692 GAGGGCACATCATTTACAGCATAAATCAAGGCTAGAAGGGTTATCTATCACCAA
196 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * * * *
28746 AAGACCTTCGAGTTCGACTACACTCATCTCCGAGGCATATCATTTGCAACATAACTCAAGGCTAG
1 AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* * * *
28811 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTGCGCTCAGCTGCAAGGCACATTATTTG
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* * *
28876 CAGCATAACTTAAGTCGAGAAGGCCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
131 CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
* * * *
28941 GAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAAC-A
196 AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
* * * * * * * *
28994 AAGACCTGCGAGTTCGACTGCGCTTAGCTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAG
1 AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
* * * *
29059 AAGGGCTATCTGCCAACCAAAGACCTTCGAGTTCGATTACACTCAGCT-CAGAGGCAAATCAAAT
66 AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCA-AGGCACATC--AT
* * *
29123 TTACAACATAGCTCAAGTGAAGAAGGGCTATCT
128 TTACAGCATAGCTTAAGTCAAGAAGGGCTATCT
29156 ATCAATAAAT
Statistics
Matches: 797, Mismatches: 108, Indels: 15
0.87 0.12 0.02
Matches are distributed among these distances:
247 2 0.00
248 104 0.13
249 438 0.55
250 28 0.04
254 225 0.28
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (249 bp):
AAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAGGCGAG
AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
CAGCATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
AAGGGCACATCATTTACAACATAACTCAAGGCTAGAAGGGTTATCTATCACCAA
Found at i:29812 original size:38 final size:38
Alignment explanation
Indices: 29771--30261 Score: 747
Period size: 38 Copynumber: 12.9 Consensus size: 38
29761 TAAAAAAACA
* * *
29771 TTTTTGAAAACATATACATTATATAGTTTTGAAAA-TAA
1 TTTTT-AAAATATATATATTATATAGTTTTGAAAATTAG
*
29809 TTTTTGAAATATATATATTATATAGTTTTGAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
*
29847 TTTTTAAAAATATATATATTATTTAGTTTTGAAAATTAG
1 TTTTT-AAAATATATATATTATATAGTTTTGAAAATTAG
29886 TTTTTAAAAATATATATATTATATAGTTTTGAAAATTAG
1 TTTTT-AAAATATATATATTATATAGTTTTGAAAATTAG
* *
29925 TTTTTAAAAAATATATATTATATAGTTTTCAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
**
29963 TTTTCGAAATATATATATTATATAGTTTTGAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
30001 TTTTTAAAA-ATATATATTATATAGTTTTGAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
* *
30038 TTTTTAAAAAATATAAATTATATAGTTTTGAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
* *
30076 TTTTTAAAAAATATATATTATATATTTTTGAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
30114 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
30152 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
* * *
30190 TTTTT-AAA-ATATATATTATATGGTTTTTAAAATTATT
1 TTTTTAAAATATATATATTATATAGTTTTGAAAATTA-G
* *
30227 TTTTTAAAAACATATATATTATATAGTTTTAAAAA
1 TTTTT-AAAATATATATATTATATAGTTTTGAAAA
30262 AACATTTTTC
Statistics
Matches: 421, Mismatches: 25, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
36 25 0.06
37 71 0.17
38 226 0.54
39 77 0.18
40 22 0.05
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (38 bp):
TTTTTAAAATATATATATTATATAGTTTTGAAAATTAG
Found at i:30179 original size:114 final size:115
Alignment explanation
Indices: 29771--30261 Score: 751
Period size: 113 Copynumber: 4.3 Consensus size: 115
29761 TAAAAAAACA
* * * * *
29771 TTTTTGAAAACATATACATTATATAGTTTTGAAAA-TAATTTTTGAAATATATATATTATATAGT
1 TTTTTAAAAACATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAATATATATTATATAGT
*
29835 TTTGAAAATTAGTTTTTAAAAATATATATATTATTTAGTTTTGAAAATTAG
66 TTTGAAAATTAGTTTTTAAAAA-ATATATATTATATAGTTTTGAAAATTAG
*
29886 TTTTTAAAAATATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAATATATATTATATAGT
1 TTTTTAAAAACATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAATATATATTATATAGT
* ** *
29951 TTTCAAAATTAGTTTTCGAAATATATATATTATATAGTTTTGAAAATTAG
66 TTTGAAAATTAGTTTTTAAAAAATATATATTATATAGTTTTGAAAATTAG
*
30001 TTTTT-AAAA-ATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAATATAAATTATATAGT
1 TTTTTAAAAACATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAATATATATTATATAGT
*
30064 TTTGAAAATTAGTTTTTAAAAAATATATATTATATATTTTTGAAAATTAG
66 TTTGAAAATTAGTTTTTAAAAAATATATATTATATAGTTTTGAAAATTAG
* *
30114 TTTTT-AAAATATATATATTATATAGTTTTGAAAATTAGTTTTTAAAATATATATATTATATAGT
1 TTTTTAAAAACATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAATATATATTATATAGT
* * *
30178 TTTGAAAATTAGTTTTT--AAAATATATATTATATGGTTTTTAAAATTATT
66 TTTGAAAATTAGTTTTTAAAAAATATATATTATATAGTTTTGAAAATTA-G
*
30227 TTTTTAAAAACATATATATTATATAGTTTTAAAAA
1 TTTTTAAAAACATATATATTATATAGTTTTGAAAA
30262 AACATTTTTC
Statistics
Matches: 347, Mismatches: 25, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
112 27 0.08
113 112 0.32
114 100 0.29
115 64 0.18
116 44 0.13
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (115 bp):
TTTTTAAAAACATATATATTATATAGTTTTGAAAATTAGTTTTTAAAAAATATATATTATATAGT
TTTGAAAATTAGTTTTTAAAAAATATATATTATATAGTTTTGAAAATTAG
Found at i:32443 original size:32 final size:30
Alignment explanation
Indices: 32402--32482 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 30
32392 TGTGTTTCGA
*
32402 GACATATGGACAGTATACCTATGTTCTAAGG
1 GACATATGGACAGT-TACCTAGGTTCTAAGG
* **
32433 GAACATATGGATAGTTTACCTAGGTTCTTCGG
1 G-ACATATGGACAG-TTACCTAGGTTCTAAGG
*
32465 GACCTATGGACAGTTACC
1 GACATATGGACAGTTACC
32483 GAGGATCTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
30 5 0.12
31 11 0.26
32 25 0.60
33 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (30 bp):
GACATATGGACAGTTACCTAGGTTCTAAGG
Found at i:32535 original size:30 final size:30
Alignment explanation
Indices: 32465--32537 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
32455 GGTTCTTCGG
* *
32465 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
32495 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
32525 GACCTCTGGATAG
1 GACCTCTGGATAG
32538 GTCCTTCGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:33965 original size:15 final size:14
Alignment explanation
Indices: 33928--34004 Score: 57
Period size: 15 Copynumber: 5.1 Consensus size: 14
33918 TCTAGTTTCG
33928 TATATTTGATTTTAT
1 TATATTT-ATTTTAT
* *
33943 CATTTTTATATTTAT
1 TATATTTAT-TTTAT
33958 TATATTTATTATTAT
1 TATATTTATT-TTAT
*
33973 TATTATTTACCTCTTAT
1 TA-TATTTA--TTTTAT
33990 TAT-TATTATTTTAT
1 TATAT-TTATTTTAT
34004 T
1 T
34005 TCATCTTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
14 9 0.18
15 24 0.48
16 10 0.20
17 6 0.12
18 1 0.02
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.66
Consensus pattern (14 bp):
TATATTTATTTTAT
Found at i:34016 original size:23 final size:26
Alignment explanation
Indices: 33963--34013 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33953 TTTATTATAT
*
33963 TTATTATTATTATTATTTACCTCTTA
1 TTATTATTATTATTATTTACATCTTA
33989 TTATTATTATT-TTATTT-CATCTTA
1 TTATTATTATTATTATTTACATCTTA
34013 T
1 T
34014 ATTTTTTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 6 0.25
26 11 0.46
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (26 bp):
TTATTATTATTATTATTTACATCTTA
Found at i:34056 original size:20 final size:20
Alignment explanation
Indices: 33948--34071 Score: 74
Period size: 21 Copynumber: 6.0 Consensus size: 20
33938 TTTATCATTT
*
33948 TTATATTTATTATATTTATTA
1 TTATTTTTATTAT-TTTATTA
* *
33969 TTATTATTATTTACCTCTTATTA
1 TTATTTTTA-TTA--TTTTATTA
* *
33992 TTATTATT-TTATTTCATCT-
1 TTATTTTTATTATTTTAT-TA
**
34011 TATATTTTT-TTGGTTTACTTA
1 T-TATTTTTATTATTTTA-TTA
*
34032 ATATTTTTATTATTTTATTA
1 TTATTTTTATTATTTTATTA
*
34052 TTATTGTTTTTTATTTTATT
1 TTATT-TTTATTATTTTATT
34072 TTTCCTTTGA
Statistics
Matches: 80, Mismatches: 14, Indels: 18
0.71 0.12 0.16
Matches are distributed among these distances:
19 5 0.06
20 27 0.34
21 30 0.38
22 3 0.04
23 14 0.17
24 1 0.01
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (20 bp):
TTATTTTTATTATTTTATTA
Found at i:34834 original size:16 final size:16
Alignment explanation
Indices: 34813--34845 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34803 TAATAAATAA
34813 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
34829 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
34845 A
1 A
34846 AATTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.21, G:0.12, T:0.09
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:34938 original size:16 final size:16
Alignment explanation
Indices: 34914--34990 Score: 109
Period size: 16 Copynumber: 4.8 Consensus size: 16
34904 TAATAAATAA
34914 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
34930 ACAAACATAAACGAAC
1 ACGAACATAAACGAAC
* *
34946 ACGAATATAAAAGAAC
1 ACGAACATAAACGAAC
*
34962 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
*
34978 ATGAACATAAACG
1 ACGAACATAAACG
34991 TTGGAGACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 53 1.00
ACGTcount: A:0.58, C:0.19, G:0.12, T:0.10
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:35437 original size:10 final size:10
Alignment explanation
Indices: 35422--35455 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
35412 ATAAATGAAT
35422 GAACATAAAC
1 GAACATAAAC
35432 GAACATAAAC
1 GAACATAAAC
*
35442 GAACATAATC
1 GAACATAAAC
35452 GAAC
1 GAAC
35456 GTTCACGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.56, C:0.21, G:0.12, T:0.12
Consensus pattern (10 bp):
GAACATAAAC
Found at i:37575 original size:20 final size:20
Alignment explanation
Indices: 37550--37596 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
37540 TATTTTTCAT
**
37550 ATTTTAAAGGTTTTAAACAC
1 ATTTTAAACATTTTAAACAC
* *
37570 ATTTTAAACATTTTCAACAT
1 ATTTTAAACATTTTAAACAC
37590 ATTTTAA
1 ATTTTAA
37597 TTAACTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (20 bp):
ATTTTAAACATTTTAAACAC
Found at i:37815 original size:14 final size:14
Alignment explanation
Indices: 37773--37825 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
37763 TAACAAAACT
37773 TCTTTGAAAAATTA
1 TCTTTGAAAAATTA
* * *
37787 TTTTTGACAACTTA
1 TCTTTGAAAAATTA
*
37801 TCTTTAAAAAATTA
1 TCTTTGAAAAATTA
*
37815 TATTTTGAAAA
1 T-CTTTGAAAA
37826 TATAATTTAT
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
14 22 0.76
15 7 0.24
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (14 bp):
TCTTTGAAAAATTA
Found at i:39938 original size:32 final size:32
Alignment explanation
Indices: 39902--40047 Score: 149
Period size: 31 Copynumber: 4.7 Consensus size: 32
39892 GGAATGTCTT
*
39902 GGGGCC-CGAGAGCCTACCCAAGAAAGTTACTC
1 GGGGCCACGAGAGCCTACCCAAGAAAGAT-CTC
* *
39934 GGGGCCACAAG-GCCTACCCAAGAATGATCTC
1 GGGGCCACGAGAGCCTACCCAAGAAAGATCTC
* * * *
39965 AGGGCCACG-GGGCCTACCCAAGAATGATCTT
1 GGGGCCACGAGAGCCTACCCAAGAAAGATCTC
* *
39996 GGGGCCAC-AGGGCCTAACCAAGAAAGATCTC
1 GGGGCCACGAGAGCCTACCCAAGAAAGATCTC
* *
40027 GAGGCCTCGA-AGCCTACCCAA
1 GGGGCCACGAGAGCCTACCCAA
40048 AGGTCTCCTT
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
30 1 0.01
31 70 0.73
32 22 0.23
33 3 0.03
ACGTcount: A:0.29, C:0.32, G:0.27, T:0.12
Consensus pattern (32 bp):
GGGGCCACGAGAGCCTACCCAAGAAAGATCTC
Found at i:39979 original size:31 final size:31
Alignment explanation
Indices: 39913--40032 Score: 150
Period size: 31 Copynumber: 3.8 Consensus size: 31
39903 GGGCCCGAGA
* *
39913 GCCTACCCAAGAAAGTTACTCGGGGCCACAAG
1 GCCTACCCAAGAAAGAT-CTCGGGGCCACAGG
* * *
39945 GCCTACCCAAGAATGATCTCAGGGCCACGGG
1 GCCTACCCAAGAAAGATCTCGGGGCCACAGG
* *
39976 GCCTACCCAAGAATGATCTTGGGGCCACAGG
1 GCCTACCCAAGAAAGATCTCGGGGCCACAGG
* *
40007 GCCTAACCAAGAAAGATCTCGAGGCC
1 GCCTACCCAAGAAAGATCTCGGGGCC
40033 TCGAAGCCTA
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
31 61 0.80
32 15 0.20
ACGTcount: A:0.29, C:0.31, G:0.27, T:0.13
Consensus pattern (31 bp):
GCCTACCCAAGAAAGATCTCGGGGCCACAGG
Found at i:40042 original size:62 final size:62
Alignment explanation
Indices: 39903--40047 Score: 168
Period size: 62 Copynumber: 2.3 Consensus size: 62
39893 GAATGTCTTG
* * *
39903 GGGCCCGAGAGCCTACCCAAGAAAGTTACTCGGGGCCACAAGGCCTACCCAAGAATGATCTCA
1 GGGCCCGA-AGCCTACCCAAGAAAGATACTCGGGGCCACAAGGCCTAACCAAGAAAGATCTCA
** * * *
39966 GGGCCACGGGGCCTACCCAAGAATGAT-CTTGGGGCCACAGGGCCTAACCAAGAAAGATCTC-
1 GGGCC-CGAAGCCTACCCAAGAAAGATACTCGGGGCCACAAGGCCTAACCAAGAAAGATCTCA
40027 GAGGCCTCGAAGCCTACCCAA
1 G-GGCC-CGAAGCCTACCCAA
40048 AGGTCTCCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
61 1 0.01
62 46 0.67
63 20 0.29
64 2 0.03
ACGTcount: A:0.29, C:0.32, G:0.27, T:0.12
Consensus pattern (62 bp):
GGGCCCGAAGCCTACCCAAGAAAGATACTCGGGGCCACAAGGCCTAACCAAGAAAGATCTCA
Found at i:42889 original size:23 final size:23
Alignment explanation
Indices: 42859--42912 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
42849 AAAAAATACC
42859 AAAA-ATAA-TAAAGAAAATAAT
1 AAAATATAACTAAAGAAAATAAT
* * *
42880 GAATATATAACTTAAGAAAGTAAT
1 -AAAATATAACTAAAGAAAATAAT
42904 AAAATATAA
1 AAAATATAA
42913 AAAATACATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 3 0.12
23 12 0.46
24 11 0.42
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (23 bp):
AAAATATAACTAAAGAAAATAAT
Found at i:43491 original size:17 final size:19
Alignment explanation
Indices: 43452--43492 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
43442 TAAATATTAA
*
43452 AAAATATAATGATTTATTT
1 AAAATATAATCATTTATTT
43471 AAAAT-TAATCATTTA-TT
1 AAAATATAATCATTTATTT
43488 AAAAT
1 AAAAT
43493 CTAAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 9 0.43
19 5 0.24
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
AAAATATAATCATTTATTT
Found at i:47364 original size:20 final size:20
Alignment explanation
Indices: 47341--47393 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
47331 CTGAAATGGG
47341 AGTATCGATACCAAGGGTAT
1 AGTATCGATACCAAGGGTAT
47361 AGTATCGATACCAAGGGTAT
1 AGTATCGATACCAAGGGTAT
47381 AGTATCGATACCA
1 AGTATCGATACCA
47394 TTTCCAAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (20 bp):
AGTATCGATACCAAGGGTAT
Found at i:47445 original size:16 final size:17
Alignment explanation
Indices: 47424--47463 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
47414 AATCTCAAAT
47424 GGTATCGGTACCGTA-G
1 GGTATCGGTACCGTAGG
*
47440 GGTATCAGTACCGTAGG
1 GGTATCGGTACCGTAGG
47457 GGTATCG
1 GGTATCG
47464 ATACATTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.20, C:0.17, G:0.38, T:0.25
Consensus pattern (17 bp):
GGTATCGGTACCGTAGG
Found at i:48425 original size:94 final size:96
Alignment explanation
Indices: 48275--48475 Score: 309
Period size: 94 Copynumber: 2.1 Consensus size: 96
48265 TACTGCTGTG
* * *
48275 GTATCGATACCAAGAGAAAGGTATCGATACCAGGGATTTCCAGAATGTAGAAATGGTATCGATAC
1 GTATCGATACCAAGAGAAAGGTATCGATACCAGGGAATTACAGAATATAGAAATGGTATCGATAC
48340 TGAAAGGGAGTATCAGTACCATAATATAGAA
66 TGAAAGGGAGTATCAGTACCATAATATAGAA
* * *
48371 GTATCGATACTAAGAG-ATGGTATCGATACCA-TGAATTACAGAATATAGAAATGGTATCGATAC
1 GTATCGATACCAAGAGAAAGGTATCGATACCAGGGAATTACAGAATATAGAAATGGTATCGATAC
* *
48434 TGAAAGGGAGTATCGGTACCATAGTATAGAA
66 TGAAAGGGAGTATCAGTACCATAATATAGAA
48465 -TATCGATACCA
1 GTATCGATACCA
48476 TGGTAGGGGT
Statistics
Matches: 96, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
93 10 0.10
94 57 0.59
95 14 0.15
96 15 0.16
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.24
Consensus pattern (96 bp):
GTATCGATACCAAGAGAAAGGTATCGATACCAGGGAATTACAGAATATAGAAATGGTATCGATAC
TGAAAGGGAGTATCAGTACCATAATATAGAA
Found at i:49191 original size:45 final size:45
Alignment explanation
Indices: 49140--49508 Score: 431
Period size: 45 Copynumber: 8.2 Consensus size: 45
49130 AAATGAATGA
* *
49140 ATAAATGAAATGCATAACGGTACATTAACAACATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACAGCATGAAAGGATGCC
* * *
49185 ATAAATGAAAGGCATAATGGTGCATTAACGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACAGCATGAAAGGATGCC
* * *
49230 ATAAATAAAATGCATAACGGTGCATTAACGGCATGAAA-AATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACAGCATGAAAGGATGCC
* * * *
49274 ATAAATGAAATGTATAACGATGCATTAAC-GACATTAAATGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACAG-CATGAAAGGATGCC
* * *
49319 ATGAATGAAATGCATAACAGTGCATTAACAGCATGAAAGGATACC
1 ATAAATGAAATGCATAACGGTGCATTAACAGCATGAAAGGATGCC
* * * *
49364 CTAAATGAAATGCACACCGGTGCATTAAC-GAAATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACAG-CATGAAAGGATGCC
* * * * * * *
49409 ATAAATGGAATACATAATGGTACATTATCGGCATGAAAGGATGTC
1 ATAAATGAAATGCATAACGGTGCATTAACAGCATGAAAGGATGCC
*
49454 ATAAATGAAATGCATAACGGTGCATTATA-AGCATGAAAGGATGCT
1 ATAAATGAAATGCATAACGGTGCATTA-ACAGCATGAAAGGATGCC
*
49499 AGAAATGAAA
1 ATAAATGAAA
49509 ATAAAGGATA
Statistics
Matches: 271, Mismatches: 47, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
43 1 0.00
44 38 0.14
45 230 0.85
46 2 0.01
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.22
Consensus pattern (45 bp):
ATAAATGAAATGCATAACGGTGCATTAACAGCATGAAAGGATGCC
Found at i:49443 original size:179 final size:180
Alignment explanation
Indices: 49143--49480 Score: 480
Period size: 179 Copynumber: 1.9 Consensus size: 180
49133 TGAATGAATA
* * * *
49143 AATGAAATGCATAACGGTACATTAACAACATGAAAGGATGCCATAAATGAAAGGCATAATGGTGC
1 AATGAAATGCATAACAGTACATTAACAACATGAAAGGATACCATAAATGAAAGGCACAACGGTGC
** * *
49208 ATTAACGGCATGAAAGGATGCCATAAATAAAATGCATAACGGTGCATTAACGGCATGAAA-AATG
66 ATTAACGAAATGAAAGGATGCCATAAATAAAATACATAACGGTACATTAACGGCATGAAAGAATG
*
49272 CCATAAATGAAATGTATAACGATGCATTAACGACATTAAATGATGCCATG
131 CCATAAATGAAATGCATAACGATGCATTAACGACATTAAATGATGCCATG
* * * * *
49322 AATGAAATGCATAACAGTGCATTAACAGCATGAAAGGATACCCTAAATGAAATGCACACCGGTGC
1 AATGAAATGCATAACAGTACATTAACAACATGAAAGGATACCATAAATGAAAGGCACAACGGTGC
** * * *
49387 ATTAACGAAATGAAAGGATGCCATAAATGGAATACATAATGGTACATTATCGGCATGAAAGGATG
66 ATTAACGAAATGAAAGGATGCCATAAATAAAATACATAACGGTACATTAACGGCATGAAAGAATG
* *
49452 TCATAAATGAAATGCATAACGGTGCATTA
131 CCATAAATGAAATGCATAACGATGCATTA
49481 TAAGCATGAA
Statistics
Matches: 137, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
179 108 0.79
180 29 0.21
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (180 bp):
AATGAAATGCATAACAGTACATTAACAACATGAAAGGATACCATAAATGAAAGGCACAACGGTGC
ATTAACGAAATGAAAGGATGCCATAAATAAAATACATAACGGTACATTAACGGCATGAAAGAATG
CCATAAATGAAATGCATAACGATGCATTAACGACATTAAATGATGCCATG
Found at i:55122 original size:45 final size:45
Alignment explanation
Indices: 55071--55440 Score: 458
Period size: 45 Copynumber: 8.2 Consensus size: 45
55061 AAATGAATGA
* *
55071 ATAAATGAAATGCATAACGATGCATTAACGACATGAAAGGATGTC
1 ATAAATGAAATGCATAACGGTGCATTAACGACATGAAAGGATGCC
* * *
55116 ATAAATGAAATACATAATGGTGCATTAACGACATGAAAAGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGACATGAAAGGATGCC
* * *
55161 ATAAATGAAATGTATAACGCTACATTAACGACATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGACATGAAAGGATGCC
* * * * * *
55206 ATAAATAAAATACATAACGATTCATTAACGACATGAAATGATGTC
1 ATAAATGAAATGCATAACGGTGCATTAACGACATGAAAGGATGCC
*
55251 ATAAATGAAATGCATAACGGCGCATTAAC-AGCATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGA-CATGAAAGGATGCC
* *
55296 ATAAATAAAATGCAT-ACTGGTGCATTAACGACATGAAAGGATGCA
1 ATAAATGAAATGCATAAC-GGTGCATTAACGACATGAAAGGATGCC
*
55341 ATAAATGAAATGCATAACGGTGCATTATCGACATGAAAGGATGCC
1 ATAAATGAAATGCATAACGGTGCATTAACGACATGAAAGGATGCC
* * * * * * **
55386 ATTAATTAAATGTATAACGATACATTATAAG-CATGAAAGGATGTT
1 ATAAATGAAATGCATAACGGTGCATTA-ACGACATGAAAGGATGCC
55431 ATAAATGAAA
1 ATAAATGAAA
55441 ATAAAGGATA
Statistics
Matches: 278, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
44 3 0.01
45 271 0.97
46 4 0.01
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (45 bp):
ATAAATGAAATGCATAACGGTGCATTAACGACATGAAAGGATGCC
Found at i:65840 original size:20 final size:20
Alignment explanation
Indices: 65811--65849 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65801 AAAGCTCATA
*
65811 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
65831 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
65850 GCGGTGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Done.