genome.fa.s2259.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002259.1 Hibiscus syriacus cultivar Beakdansim tig00004592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132567

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4937--4966	13	2.4	13	94	5	53	50	0	10	40	1.36
9293--9332	21	1.9	21	90	10	64	32	7	5	55	1.50
11223--11371	65	2.3	64	81	3	165	28	18	23	30	1.97
12123--12588	84	5.6	84	84	3	600	33	24	19	23	1.97
12129--12588	167	2.8	167	87	2	672	32	24	19	23	1.97
12593--12893	86	3.5	86	80	2	336	34	22	17	24	1.96
12469--12741	146	1.9	143	84	5	361	33	24	17	24	1.96
12597--12833	87	2.7	86	81	3	287	35	22	18	23	1.96
12865--13192	169	1.9	169	86	1	460	33	21	19	25	1.97
13711--14150	39	11.8	36	84	9	394	44	3	6	45	1.45
14122--14169	25	1.9	25	82	0	60	37	0	6	56	1.25
13702--14163	37	12.3	36	81	10	344	44	3	7	45	1.46
20562--20587	3	8.7	3	100	0	52	30	0	0	69	0.89
20595--20631	19	1.9	19	88	0	56	16	5	2	75	1.10
20641--20717	31	2.4	32	76	8	77	19	5	2	72	1.15
20664--20723	26	2.4	25	78	13	70	21	3	1	73	1.07
20688--20735	19	2.5	18	83	12	60	18	4	2	75	1.07
20593--20726	14	9.1	14	67	22	55	19	6	2	71	1.19
20752--20776	10	2.5	10	100	0	50	28	0	8	64	1.22
25675--25728	22	2.5	22	82	11	67	46	24	5	24	1.74
29586--29636	21	2.4	21	78	18	61	21	31	7	39	1.82
35388--35485	40	2.5	39	75	14	103	34	5	0	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35623--35672	7	7.8	6	85	14	57	18	2	2	78	0.95
35601--35679	27	2.9	27	73	17	83	13	6	2	77	1.07
35629--35672	20	2.2	20	84	15	56	18	2	2	77	0.98
35623--35672	13	3.9	12	80	19	57	18	2	2	78	0.95
49862--49920	7	7.8	8	76	12	54	45	1	0	52	1.10
54042--54067	7	3.7	7	100	0	52	11	30	26	30	1.92
57056--57280	112	2.0	111	99	0	441	45	13	18	22	1.84
61438--61503	3	22.0	3	100	0	132	0	66	0	33	0.92
62755--62817	32	2.0	32	93	0	108	23	28	30	17	1.97
63905--63967	27	2.3	28	80	2	83	22	11	19	47	1.80
67666--67802	27	5.1	27	98	0	256	14	15	33	36	1.88
72814--72860	21	2.2	21	100	0	94	27	34	19	19	1.96
73077--73105	5	6.0	5	92	8	51	20	20	58	0	1.39
75128--75205	38	2.1	38	97	0	147	44	11	6	37	1.66
84184--84226	16	2.7	16	85	0	50	34	0	0	65	0.93
84907--84976	34	2.1	34	83	5	88	24	2	5	67	1.26
86923--87022	49	2.1	49	90	1	157	33	12	4	51	1.58
91495--91543	3	15.7	3	80	16	55	36	2	0	61	1.08
98644--98701	27	2.1	27	100	0	116	17	32	20	29	1.95
100678--100838	56	2.9	56	87	1	234	31	24	16	27	1.96
100739--101334	137	4.4	138	85	3	760	33	22	18	25	1.96
100739--101334	273	2.2	274	87	1	856	33	22	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101208--101357	82	1.8	81	87	4	221	36	22	16	24	1.94
101208--101374	82	2.0	81	85	3	219	38	21	16	23	1.93
107829--107862	16	2.2	15	89	5	50	58	0	0	41	0.98
108795--108959	60	2.8	60	86	2	217	31	21	5	41	1.75
108867--108958	29	3.1	29	71	17	89	33	23	4	38	1.75
109080--109377	149	2.0	149	97	0	560	38	6	24	29	1.81
110960--111010	26	2.0	26	92	0	84	41	7	15	35	1.76
120353--120418	31	2.1	31	85	0	87	31	24	10	33	1.89
122370--122437	31	2.3	30	89	5	102	36	11	23	27	1.90
124774--124943	60	2.8	58	77	7	162	41	4	21	32	1.74

Tables:   1

The End!