Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000226.1 Hibiscus syriacus cultivar Beakdansim tig00000396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64442

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1148--1187
21
1.9
21
85
10
55
35
10
2
52
1.48
4613--4763
64
2.3
65
89
4
225
31
1
13
52
1.52
4906--4944
20
2.0
20
94
0
69
17
20
20
41
1.91
7399--7452
24
2.2
24
90
0
81
42
18
18
20
1.89
8405--8467
19
3.3
19
88
2
90
30
11
23
34
1.90
11028--11075
19
2.5
20
82
3
53
52
14
2
31
1.54
16794--17005
29
7.4
29
77
12
179
41
19
4
34
1.71
17021--17048
10
2.8
10
100
0
56
10
32
32
25
1.90
18021--18051
2
15.5
2
100
0
62
48
0
0
51
1.00
18789--18823
18
1.9
18
100
0
70
17
22
34
25
1.96
21338--21412
32
2.4
32
80
8
91
33
22
16
28
1.95
21338--21426
31
2.8
32
76
8
94
34
22
16
25
1.95
26390--26477
31
2.8
31
77
14
92
36
20
18
25
1.95
27934--27975
3
13.3
3
85
9
57
61
0
7
30
1.22
28657--28729
23
3.2
23
96
0
128
16
26
32
24
1.96
31077--31111
2
17.5
2
100
0
70
51
0
0
48
1.00
35438--35480
2
21.5
2
100
0
86
51
0
0
48
1.00
35624--35689
16
4.1
16
76
0
69
9
12
30
48
1.71
35627--35689
32
2.0
32
87
0
90
9
11
31
47
1.71
39982--40007
12
2.2
12
100
0
52
53
7
7
30
1.57
44459--44488
15
2.0
15
100
0
60
13
46
13
26
1.80
49981--50035
26
2.1
26
86
0
74
32
12
16
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50208--50254
20
2.3
20
85
7
60
42
0
10
46
1.38
50217--50255
20
2.0
20
90
5
62
38
0
7
53
1.30
50690--50737
16
3.1
15
77
11
53
39
0
0
60
0.97
52711--52769
24
2.5
24
76
13
59
62
6
8
22
1.47
54676--55126
228
2.0
224
80
4
494
31
18
18
31
1.95
56446--56498
18
2.9
18
97
0
97
24
33
24
16
1.96
58580--58626
19
2.5
19
83
10
62
25
17
31
25
1.97
58470--58677
65
3.2
63
80
13
228
28
16
25
30
1.96

Tables:   1

The End!