genome.fa.s2261.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002261.1 Hibiscus syriacus cultivar Beakdansim tig00004601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113586

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1360--1406	18	2.6	18	77	12	51	44	21	0	34	1.52
1708--1798	23	4.0	22	87	5	128	27	26	26	19	1.99
1708--1798	45	2.0	46	89	2	139	27	26	26	19	1.99
1804--2014	99	2.1	97	84	7	266	36	22	13	27	1.92
3364--3422	20	2.8	21	87	7	84	16	27	25	30	1.97
4285--4326	17	2.5	17	80	3	50	40	21	0	38	1.53
6650--6699	18	2.7	18	74	20	50	42	24	2	32	1.66
7018--7127	23	4.8	23	90	0	157	27	25	29	18	1.98
7129--7351	101	2.2	102	88	4	355	36	21	13	27	1.92
8622--8680	22	2.7	22	97	0	109	13	27	33	25	1.93
8715--8772	20	2.8	21	86	7	82	20	27	20	31	1.98
9791--9902	58	1.9	58	83	5	147	33	17	15	33	1.91
9791--9919	58	2.2	57	82	6	143	32	17	17	33	1.93
10927--11014	21	4.2	21	75	5	79	35	11	12	40	1.79
14056--14212	65	2.4	65	88	2	217	28	22	18	31	1.97
19910--19983	23	3.3	22	81	7	96	25	22	22	28	1.99
19922--19980	21	2.7	23	84	5	77	27	18	23	30	1.98
22322--22351	13	2.3	13	94	0	51	40	10	3	46	1.54
30351--30507	21	7.8	20	72	7	84	38	24	17	19	1.92
30474--30666	20	9.6	20	83	4	228	35	25	20	18	1.95
30813--30867	22	2.5	22	78	0	65	23	38	16	21	1.93
31164--31238	19	3.8	20	84	7	98	44	18	25	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31257--31354	19	5.7	19	69	22	81	10	22	22	44	1.82
31279--31368	14	5.7	14	72	23	72	8	23	23	44	1.81
31262--31376	33	3.5	33	96	0	212	9	22	20	46	1.79
32080--32525	221	2.0	220	98	1	858	26	13	21	39	1.90
33234--33608	93	4.1	93	98	0	718	22	12	19	45	1.84
33671--33783	19	6.5	19	74	19	120	46	28	17	7	1.74
33691--33783	33	2.8	32	91	4	150	46	27	18	7	1.76
33671--33783	52	2.2	51	81	9	131	46	28	17	7	1.74
33779--33897	19	6.8	18	72	18	92	9	17	25	47	1.77
33784--33913	33	3.8	33	84	6	143	10	16	26	47	1.77
33848--33913	19	3.4	20	87	6	100	12	15	27	45	1.81
35808--35843	14	2.6	14	95	0	63	33	0	22	44	1.53
35946--36043	19	5.4	19	84	13	143	45	17	22	14	1.84
35946--36062	53	2.2	53	98	1	227	44	17	23	13	1.85
36052--36220	19	9.7	19	75	19	172	14	21	18	45	1.85
36058--36192	51	2.6	52	95	3	245	14	22	17	46	1.83
36058--36234	33	5.2	34	80	13	165	13	21	18	46	1.83
38538--38562	12	2.1	12	100	0	50	0	28	0	72	0.86
38737--38783	24	2.0	24	87	8	69	38	21	14	25	1.92
39494--39738	20	12.2	20	87	1	258	20	18	24	36	1.95
39725--39807	21	4.0	21	73	6	78	25	16	24	33	1.96
39705--39803	42	2.4	43	77	11	100	21	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39997--40033	2	18.5	2	100	0	74	51	0	0	48	1.00
41232--41261	2	15.0	2	100	0	60	50	0	0	50	1.00
41766--41812	23	2.0	24	84	8	62	53	8	21	17	1.70
45060--45194	67	2.0	67	98	0	261	42	13	29	14	1.83
50464--50503	21	1.9	21	89	0	62	10	25	40	25	1.86
50486--50545	19	2.9	20	85	9	68	16	26	35	21	1.95
59476--59534	22	2.7	22	94	0	109	40	13	20	25	1.89
60033--60781	228	3.3	225	86	6	972	42	16	11	29	1.83
62544--62816	41	6.6	41	85	2	314	24	16	18	40	1.91
62504--62816	82	3.8	82	83	2	313	25	16	18	38	1.92
63749--64023	138	2.0	139	92	1	462	27	14	14	43	1.84
65636--65770	43	3.2	43	87	1	191	22	18	19	39	1.93
70281--70338	24	2.4	24	85	2	71	31	5	10	53	1.57
70569--70619	20	2.5	21	81	12	61	62	3	3	29	1.31
70729--70755	14	1.9	14	100	0	54	44	0	7	48	1.31
72673--72714	2	22.0	2	90	9	70	50	0	50	0	1.00
77047--77103	29	2.0	29	82	6	71	40	15	15	28	1.88
77140--77164	13	1.9	13	100	0	50	20	16	16	48	1.82
79530--79571	21	2.0	21	95	0	75	30	14	7	47	1.71
79566--79669	33	3.2	33	94	1	174	31	7	16	44	1.76
79711--79755	14	3.2	14	96	0	81	22	11	13	53	1.71
79743--79776	17	2.0	17	100	0	68	41	11	11	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82075--82132	24	2.5	22	84	10	80	24	0	5	70	1.07
82090--82146	24	2.4	24	81	0	60	28	1	3	66	1.18
82842--82954	60	1.9	60	86	0	163	34	16	13	35	1.88
82831--82968	60	2.3	59	80	9	161	34	18	13	34	1.89
83834--83983	60	2.5	60	87	0	210	36	10	9	44	1.72
85288--85354	33	2.0	33	82	0	80	22	22	4	50	1.66
85694--85879	61	3.1	60	84	5	225	38	6	25	29	1.81
86245--86367	47	2.7	47	85	2	160	30	20	17	31	1.96
107260--107292	17	2.0	17	88	5	50	33	42	3	21	1.68

Tables:   1

The End!