Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002263.1 Hibiscus syriacus cultivar Beakdansim tig00004603_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89885

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7002--7053
27
2.0
25
81
7
59
51
17
13
17
1.76
9432--9491
25
2.3
26
83
11
70
41
3
3
51
1.35
20725--20777
25
2.1
25
92
0
88
32
26
22
18
1.97
23398--23453
25
2.3
23
76
8
58
48
5
14
32
1.66
23421--23510
26
3.5
26
75
10
78
47
6
14
31
1.70
23401--23529
50
2.6
49
74
7
125
48
6
11
33
1.67
26524--26715
83
2.3
82
83
4
242
36
15
17
30
1.91
26645--26825
41
4.4
41
75
6
127
30
14
18
35
1.91
27008--27076
28
2.6
27
82
11
88
43
4
11
40
1.61
27092--27138
22
2.2
21
85
11
60
46
2
12
38
1.54
27498--27581
38
2.2
38
100
0
168
32
23
9
34
1.87
35006--35040
19
1.9
19
88
11
56
57
2
0
40
1.14
36614--36644
16
1.9
16
93
0
53
54
16
9
19
1.68
50630--50692
32
2.0
32
90
0
99
25
15
26
31
1.96
51177--51250
38
1.9
38
81
5
87
51
24
10
13
1.73
51211--51341
32
4.1
33
77
9
128
41
28
13
16
1.86
51211--51341
16
8.2
16
71
8
97
41
28
13
16
1.86
51211--51341
48
2.7
47
75
9
138
41
28
13
16
1.86
52018--52115
32
3.0
31
78
12
108
35
30
12
21
1.90
52099--52129
16
2.0
15
93
6
53
22
32
19
25
1.97
52269--52300
15
2.1
15
94
0
55
31
40
18
9
1.83
53078--53162
16
5.3
16
76
8
57
9
16
29
44
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53085--53169
32
2.6
31
75
14
73
11
15
28
44
1.81
55577--55632
29
1.9
29
88
0
85
32
10
0
57
1.33
60125--60530
138
2.9
137
84
3
494
37
15
25
21
1.92
62514--62561
16
3.1
16
76
11
55
22
14
4
58
1.54
63427--63518
2
46.0
2
100
0
184
50
0
0
50
1.00
64331--64427
29
3.3
28
64
22
65
36
21
3
39
1.69
67596--67625
15
2.0
15
93
0
51
43
0
0
56
0.99
69311--69350
21
1.9
21
94
0
71
17
5
20
57
1.58
75503--75574
19
3.5
20
80
9
83
29
16
26
27
1.97
75503--75574
22
3.6
19
81
9
81
29
16
26
27
1.97
75922--76067
55
2.7
53
81
9
159
34
11
19
34
1.88
75925--76078
54
2.8
54
82
4
166
35
11
18
35
1.86
76348--77052
81
8.7
81
87
1
923
36
11
24
27
1.90
76348--77052
242
2.9
243
87
2
1015
36
11
24
27
1.90
76347--77052
323
2.2
322
87
2
995
36
11
24
27
1.90
77191--77280
45
2.0
45
95
0
162
50
7
16
25
1.72
82957--83012
21
2.7
21
88
0
85
23
19
30
26
1.98
84711--85022
156
2.0
156
99
0
615
22
19
20
38
1.94

Tables:   1

The End!