Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002264.1 Hibiscus syriacus cultivar Beakdansim tig00004605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113934

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2219--2330
30
3.8
29
80
11
122
82
0
16
0
0.73
2232--2358
11
11.8
10
80
12
110
81
0
16
1
0.82
2219--2370
14
10.0
14
74
16
99
80
1
15
2
0.90
2238--2351
20
5.8
20
84
10
137
82
0
15
0
0.77
2247--2330
1
84.0
1
68
0
51
84
0
15
0
0.62
2220--2358
18
7.3
19
79
13
126
80
1
16
1
0.86
5242--5290
24
2.0
24
100
0
98
32
12
12
42
1.79
9691--9721
2
15.5
2
100
0
62
48
0
0
51
1.00
11938--11971
3
11.0
3
93
6
59
64
0
0
35
0.94
14786--14819
15
2.3
15
94
0
59
41
14
0
44
1.45
19084--19126
20
2.2
20
87
8
61
65
13
2
18
1.38
19524--19567
20
2.2
19
92
8
70
20
29
29
20
1.98
19534--19611
22
3.6
21
79
16
79
23
25
30
20
1.98
23395--23434
21
1.9
21
89
0
62
30
7
7
55
1.56
25089--25127
20
2.0
20
94
0
69
12
25
33
28
1.93
26143--26258
39
3.0
39
88
0
178
35
27
23
13
1.93
33097--33128
12
2.7
12
100
0
64
28
50
6
15
1.68
33127--33321
39
5.0
39
79
2
178
32
23
26
18
1.97
37807--37846
21
1.9
21
85
10
55
32
20
22
25
1.98
42268--42327
31
2.0
29
83
6
75
51
1
3
43
1.28
45632--45661
15
1.9
16
93
6
53
16
0
0
83
0.65
53891--53946
19
2.9
19
81
0
76
33
14
32
19
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56581--56827
117
2.1
117
87
1
361
35
16
23
24
1.95
57253--57286
4
8.5
4
93
0
59
73
0
0
26
0.83
58241--58267
4
6.8
4
100
0
54
77
0
0
22
0.76
58532--58564
2
16.5
2
100
0
66
51
0
0
48
1.00
59866--59944
21
3.8
21
87
0
113
22
39
15
22
1.91
59931--59974
22
1.9
24
86
9
65
22
34
18
25
1.96
63962--64027
18
3.6
18
70
11
62
33
6
4
56
1.44
66702--66741
21
1.9
21
85
10
55
35
17
20
27
1.95
71162--71221
31
2.0
29
83
6
75
51
1
3
43
1.28
75018--75083
18
3.6
18
70
11
62
33
6
4
56
1.44
79275--79325
23
2.3
23
86
3
68
17
1
1
78
0.94
89377--89409
2
16.5
2
100
0
66
51
0
0
48
1.00
89569--89598
15
2.0
15
93
0
51
53
6
3
36
1.44
90823--90897
3
25.0
3
79
5
80
58
0
0
41
0.98
91313--91391
21
3.7
21
86
10
108
22
39
17
20
1.92
92972--93017
14
3.3
14
93
0
74
8
15
23
52
1.70
92947--93037
38
2.4
39
81
7
98
13
15
19
51
1.76
92987--93037
24
2.1
24
88
0
75
11
11
19
56
1.65
94089--94153
16
4.1
16
89
0
94
7
15
24
52
1.69
94222--94252
16
1.9
16
100
0
62
6
12
22
58
1.58
95288--95338
25
2.1
24
85
3
66
66
13
9
9
1.44
97219--97284
18
3.6
18
70
11
62
33
6
4
56
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111459--111519
30
2.0
30
84
6
79
31
21
19
27
1.97

Tables:   1

The End!