genome.fa.s2265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002265.1 Hibiscus syriacus cultivar Beakdansim tig00004606_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127000

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3268--3308	21	2.0	21	90	9	66	73	4	0	21	1.02
3381--3439	12	5.0	12	71	19	52	49	3	0	47	1.18
3365--3824	37	12.0	37	77	14	266	44	6	2	45	1.44
3631--3657	2	13.5	2	100	0	54	48	0	0	51	1.00
3637--3805	39	4.3	40	88	8	251	44	7	2	44	1.45
4630--4929	87	3.5	86	82	2	318	24	17	23	34	1.96
4934--5397	84	5.6	84	84	3	607	22	19	24	32	1.97
4934--5391	166	2.8	167	88	2	679	23	19	24	32	1.98
6146--6292	65	2.3	64	82	3	170	30	21	18	29	1.97
8187--8226	21	1.9	21	90	10	64	55	5	7	32	1.50
10209--10288	23	3.6	22	71	6	72	27	25	22	25	2.00
12223--12302	25	3.1	26	73	12	67	22	0	20	57	1.41
12559--12588	13	2.4	13	94	5	53	40	10	0	50	1.36
12940--13088	65	2.3	64	80	3	147	32	20	16	30	1.94
18337--18448	9	12.0	9	71	12	66	77	3	3	15	1.04
18338--18443	38	2.8	37	83	10	119	78	3	3	14	1.03
18456--18536	12	6.4	12	71	14	56	75	2	4	17	1.09
18348--18485	5	27.8	5	69	19	58	75	2	5	16	1.10
21658--21717	2	30.0	2	93	6	104	50	0	1	48	1.11
28550--28748	36	5.5	36	85	1	238	36	23	19	20	1.95
29130--29895	51	14.6	51	80	10	654	33	19	24	22	1.97
29119--29791	155	4.3	156	83	6	743	32	19	24	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29884--30811	55	17.0	55	80	7	903	30	14	25	28	1.95
29857--30656	215	3.7	219	83	6	609	30	14	26	27	1.95
29884--30811	108	8.5	109	83	6	875	30	14	25	28	1.95
29908--30604	215	3.2	218	85	5	799	30	14	27	28	1.95
29908--30811	270	3.3	268	81	7	911	30	14	25	28	1.95
33467--33514	2	24.0	2	91	8	80	50	0	2	47	1.12
40350--40548	36	5.5	36	85	1	238	36	23	19	20	1.95
42065--42104	21	1.9	21	85	10	55	25	0	22	52	1.47
43414--43655	35	6.8	36	82	10	225	45	5	3	46	1.42
43414--43655	72	3.4	71	79	12	207	45	5	3	46	1.42
43622--43680	26	2.3	26	88	2	84	47	8	0	44	1.33
44464--44499	2	18.0	2	100	0	72	50	0	0	50	1.00
44833--44954	60	2.0	59	81	9	140	33	17	3	45	1.64
45502--45548	20	2.3	20	78	10	51	38	4	14	42	1.66
45851--45893	18	2.4	18	80	3	52	62	0	0	37	0.95
56867--56898	17	1.9	17	93	6	57	40	0	0	59	0.97
60916--60961	18	2.4	18	85	10	56	10	2	26	60	1.41
60965--61012	3	16.3	3	82	4	53	58	2	0	39	1.10
61186--61231	20	2.3	20	100	0	92	47	8	15	28	1.74
61931--61957	4	6.8	4	100	0	54	74	0	0	25	0.83
61968--61994	13	2.1	13	100	0	54	22	25	14	37	1.93
73169--73229	15	3.9	15	73	12	52	42	1	1	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73527--73563	16	2.5	14	87	12	56	56	0	0	43	0.99
80259--80299	2	20.5	2	94	0	73	48	0	2	48	1.14
81050--81230	70	2.6	70	96	1	330	52	18	14	14	1.75
83756--83799	14	3.1	14	93	0	79	25	0	15	59	1.37
84361--84412	3	17.7	3	96	4	97	34	0	0	65	0.93
93040--93107	9	8.8	8	78	16	65	76	0	11	11	1.02
93039--93107	16	3.9	17	77	20	70	76	0	11	11	1.01
93040--93108	22	2.9	23	79	16	70	76	0	11	11	1.01
93043--93101	30	2.0	30	87	12	86	72	0	13	13	1.11
93041--93119	38	2.1	37	84	11	99	75	0	13	10	1.03
94423--94812	108	3.6	110	94	2	673	28	14	28	27	1.96
94423--94812	55	7.2	55	90	3	610	28	14	28	27	1.96
94806--95136	52	6.4	52	95	0	592	28	16	25	29	1.96
94855--94939	28	3.2	28	63	13	79	27	15	24	32	1.95
94806--95201	104	3.8	102	90	3	449	28	16	25	29	1.97
94806--95201	156	2.5	153	85	6	492	28	16	25	29	1.97
95122--95947	55	15.4	54	80	8	642	33	17	24	25	1.96
95122--95746	110	5.8	109	81	9	707	32	18	24	24	1.97
95124--95746	54	11.7	54	83	5	700	32	18	24	24	1.97
96190--96232	3	14.7	3	95	4	79	34	0	0	65	0.93
99422--99466	19	2.5	17	85	10	54	28	22	24	24	1.99
99438--99647	65	3.3	62	78	13	221	25	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103911--103950	20	2.0	20	95	0	71	25	22	30	22	1.99
104227--104296	34	2.2	32	82	7	79	32	14	32	20	1.92
112476--112502	2	13.5	2	100	0	54	51	0	0	48	1.00
113805--113862	24	2.3	24	80	14	64	56	1	1	39	1.19
120658--120703	8	5.8	8	86	0	65	45	0	10	43	1.39
121973--122155	70	2.6	70	97	0	339	15	13	15	55	1.70
122576--122633	29	2.0	29	86	3	80	29	24	15	31	1.95
122649--122777	51	2.5	50	85	7	161	16	34	30	19	1.94

Tables:   1

The End!