Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002266.1 Hibiscus syriacus cultivar Beakdansim tig00004608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97464
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:1853 original size:23 final size:23
Alignment explanation
Indices: 1827--1872 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
1817 TTTTTCTCTT
1827 TTTTGTCCTTTT-TGTTTTTGATA
1 TTTTGTCCTTTTCT-TTTTTGATA
* *
1850 TTTTTTTCTTTTCTTTTTTGATA
1 TTTTGTCCTTTTCTTTTTTGATA
1873 AATAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.74
Consensus pattern (23 bp):
TTTTGTCCTTTTCTTTTTTGATA
Found at i:2377 original size:55 final size:55
Alignment explanation
Indices: 2200--2755 Score: 579
Period size: 55 Copynumber: 10.3 Consensus size: 55
2190 TACTCCACTC
* * * *
2200 TTCTTTCAGGGAG-ATAAGACTCGAGA-AATCTTTTGAAGATGGGTAT-GCTCCACTC
1 TTCTTTCAGGGAGTATAAAACTCGA-ACAATCTTCTGAAAATGGGT-TCGCTCC-CTA
* ** * *
2255 TTCTTTCAGAGAG-ATAAAACTCGAGA-AATCTT-TGAAAACAGGTCCGTTCCCTA
1 TTCTTTCAGGGAGTATAAAACTCGA-ACAATCTTCTGAAAATGGGTTCGCTCCCTA
* * **
2308 TTCTTTCACGGAGTATAAAACTCGAACAATCTTCTGAAAATGAGTTCGCTCTTTA
1 TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
* * *
2363 TTTTTTCAGGGAGTAT-AAA-TCGAACAATTTTCTGAAAACGGGTTCGCT-CCTA
1 TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
* * * *
2415 TTCTTTCAAGGAGTATAGAACTAGAACAATCTTCTG-AAATGGG-TCTC-CCCTA
1 TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
* * ** *
2467 TTTTTTCAGGGATTATAAAACTCGAACAATCTTCTGAAAA--CATATCTGCTCCATA
1 TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGT-TC-GCTCCCTA
* * * * *
2522 TTCTTTCATGGAGTATATAACTCGAACAATCTTCTGAAAACGGTTTCGCTCCTTA
1 TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
* *
2577 TTCTTTCAGGGAGTATAAAAACTCGAACAATCTTCTGAAAACGGGTTCACTCCCTA
1 TTCTTTCAGGGAGTAT-AAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
* * *
2633 TTCTTTCA-GG-GTATAGAACTTGAACAATCTTC-GAAAATGGGTCCGCTCCCTA
1 TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
* * * *
2685 TTATTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGAGTTCACTCCCTA
1 TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
2740 TTCTTTCAGGGAGTAT
1 TTCTTTCAGGGAGTAT
2756 CTTCATAAAA
Statistics
Matches: 420, Mismatches: 63, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
52 78 0.19
53 71 0.17
54 71 0.17
55 154 0.37
56 45 0.11
57 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (55 bp):
TTCTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTA
Found at i:2428 original size:107 final size:110
Alignment explanation
Indices: 2191--2755 Score: 590
Period size: 107 Copynumber: 5.2 Consensus size: 110
2181 AGACGAGTCT
* * * *
2191 ACTCCACTCTTCTTTCAGGGAG-ATA-AGACTCGAGA-AATCTTTTGAAGATGGGTAT-GCTCCA
1 ACTCC-CTATTCTTTCAAGGAGTATAGA-ACTCGA-ACAATCTTCTGAAAATGGGT-TCGCTCC-
* * * * *
2252 CTCTTCTTTCAGAGAG-ATAAAACTCGAGA-AATCTT-TGAAAACAGGTCC
61 CTATTTTTTCAGGGAGTATAAAACTCGA-ACAATCTTCTGAAAACGGGTTC
** * * * **
2300 GTTCCCTATTCTTTCACGGAGTATAAAACTCGAACAATCTTCTGAAAATGAGTTCGCTCTTTATT
1 ACTCCCTATTCTTTCAAGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATT
*
2365 TTTTCAGGGAGTAT-AAA-TCGAACAATTTTCTGAAAACGGGTTC
66 TTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAACGGGTTC
* * *
2408 GCT-CCTATTCTTTCAAGGAGTATAGAACTAGAACAATCTTCTG-AAATGGG-TCTC-CCCTATT
1 ACTCCCTATTCTTTCAAGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATT
* *
2469 TTTTCAGGGATTATAAAACTCGAACAATCTTCTGAAAAC--ATATC
66 TTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAACGGGT-TC
* * * * * * *
2513 TGCTCCATATTCTTTCATGGAGTATATAACTCGAACAATCTTCTGAAAACGGTTTCGCTCCTTAT
1 -ACTCCCTATTCTTTCAAGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTAT
*
2578 TCTTTCAGGGAGTATAAAAACTCGAACAATCTTCTGAAAACGGGTTC
65 TTTTTCAGGGAGTAT-AAAACTCGAACAATCTTCTGAAAACGGGTTC
* *
2625 ACTCCCTATTCTTTC-AGG-GTATAGAACTTGAACAATCTTC-GAAAATGGGTCCGCTCCCTATT
1 ACTCCCTATTCTTTCAAGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATT
* * * *
2687 ATTTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGAGTTC
66 TTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAACGGGTTC
*
2732 ACTCCCTATTCTTTCAGGGAGTAT
1 ACTCCCTATTCTTTCAAGGAGTAT
2756 CTTCATAAAA
Statistics
Matches: 385, Mismatches: 51, Indels: 40
0.81 0.11 0.08
Matches are distributed among these distances:
104 19 0.05
105 8 0.02
106 29 0.08
107 125 0.32
108 82 0.21
109 60 0.16
110 21 0.05
111 38 0.10
112 2 0.01
113 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (110 bp):
ACTCCCTATTCTTTCAAGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTTCGCTCCCTATT
TTTTCAGGGAGTATAAAACTCGAACAATCTTCTGAAAACGGGTTC
Found at i:2700 original size:270 final size:271
Alignment explanation
Indices: 2245--2751 Score: 665
Period size: 270 Copynumber: 1.9 Consensus size: 271
2235 AAGATGGGTA
* *
2245 TGCTCCACTCTTCTTTCAGAGAGATAAAACTCGAGAAATCTTTGAAAACAGGTCCGTTCCCTATT
1 TGCTCCACTATTCTTTCAGAGAGATAAAACTCGAGAAATCTTTGAAAACAGGTCCGCTCCCTATT
* * ** *
2310 CTTTCACGGAGTATAAAACTCGAACAATCTTCTGAAAATGAGTTCGCTCTTTATTTTTTCAGGGA
66 CTTTCACGGAGTATAAAACTCGAACAATCTTCTGAAAACGAGTTCACTCCCTATTCTTTCAGGGA
* * *
2375 GTATAAATCGAACAATTTTCTGAAAACGGGTTCGCTCCTATTCTTTCAAGGAGTATAGAACTAGA
131 GTATAAATCGAACAATCTTCTGAAAACGGGTCCGCTCCTATTATTTCAAGGAGTATAGAACTAGA
* *
2440 ACAATCTTCTG-AAATG-GGTCTC-CCCTATTTTTTCAGGGATTATAAAACTCGAACAATCTTCT
196 ACAATCTTCTGAAAATGAGGTCACTCCCTATTCTTTCAGGGATTATAAAACTCGAACAATCTTCT
2502 GAAAACATATC
261 GAAAACATATC
* *
2513 TGCTCCA-TATTCTTTCATG-GAGTATATAACTCGA-ACAATCTTCTGAAAAC-GGTTTCGCTCC
1 TGCTCCACTATTCTTTCA-GAGAG-ATAAAACTCGAGA-AATCTT-TGAAAACAGG-TCCGCTCC
* * *
2574 TTATTCTTTCAGGGAGTATAAAAACTCGAACAATCTTCTGAAAACGGGTTCACTCCCTATTCTTT
61 CTATTCTTTCACGGAGTAT-AAAACTCGAACAATCTTCTGAAAACGAGTTCACTCCCTATTCTTT
* * *
2639 CA-GG-GTATAGAACTTGAACAATCTTC-GAAAATGGGTCCGCTCCCTATTATTTCAGGGAGTAT
125 CAGGGAGTATA-AA-TCGAACAATCTTCTGAAAACGGGTCCGCT-CCTATTATTTCAAGGAGTAT
* *
2701 AGAACTCGAACAATCTTCTGAAAATGAGTTCACTCCCTATTCTTTCAGGGA
187 AGAACTAGAACAATCTTCTGAAAATGAGGTCACTCCCTATTCTTTCAGGGA
2752 GTATCTTCAT
Statistics
Matches: 205, Mismatches: 22, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
267 13 0.06
268 31 0.15
269 47 0.23
270 89 0.43
271 5 0.02
272 4 0.02
273 16 0.08
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (271 bp):
TGCTCCACTATTCTTTCAGAGAGATAAAACTCGAGAAATCTTTGAAAACAGGTCCGCTCCCTATT
CTTTCACGGAGTATAAAACTCGAACAATCTTCTGAAAACGAGTTCACTCCCTATTCTTTCAGGGA
GTATAAATCGAACAATCTTCTGAAAACGGGTCCGCTCCTATTATTTCAAGGAGTATAGAACTAGA
ACAATCTTCTGAAAATGAGGTCACTCCCTATTCTTTCAGGGATTATAAAACTCGAACAATCTTCT
GAAAACATATC
Found at i:3001 original size:37 final size:37
Alignment explanation
Indices: 2922--3006 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 37
2912 TCGAACAATC
2922 TTGATTTGCTTCACTACTCTTCTGTGAAGGCTTATAG
1 TTGATTTGCTTCACTACTCTTCTGTGAAGGCTTATAG
*
2959 ATGATTTGCTTCACTACTCTTCTGTGAAGGCTTA-AG
1 TTGATTTGCTTCACTACTCTTCTGTGAAGGCTTATAG
2995 TTTGA-TTGCTTC
1 -TTGATTTGCTTC
3007 GAAGGTCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 9 0.20
37 36 0.80
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (37 bp):
TTGATTTGCTTCACTACTCTTCTGTGAAGGCTTATAG
Found at i:3927 original size:27 final size:27
Alignment explanation
Indices: 3889--3941 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
3879 GAATGACTCA
3889 AGTGTAGCTTCTGTCAAAAGGATCTCG
1 AGTGTAGCTTCTGTCAAAAGGATCTCG
3916 AGTGTAGCTTCTGTCAAAAGGATCTC
1 AGTGTAGCTTCTGTCAAAAGGATCTC
3942 CAAAATTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (27 bp):
AGTGTAGCTTCTGTCAAAAGGATCTCG
Found at i:4308 original size:8 final size:8
Alignment explanation
Indices: 4276--4351 Score: 64
Period size: 8 Copynumber: 9.1 Consensus size: 8
4266 CCCCCTTTTA
*
4276 TTTTCTCT
1 TTTTCTTT
*
4284 TTCTCTTT
1 TTTTCTTT
*
4292 CTCTTCTTT
1 -TTTTCTTT
4301 TTTTC-TT
1 TTTTCTTT
4308 TTTTCTTT
1 TTTTCTTT
4316 TTTTCTTTT
1 TTTTC-TTT
4325 TCTTTCATTT
1 T-TTTC-TTT
* *
4335 TTCTCATT
1 TTTTCTTT
4343 TTTTCTTT
1 TTTTCTTT
4351 T
1 T
4352 CATTTTTCTA
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
7 7 0.13
8 26 0.48
9 13 0.24
10 8 0.15
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTCTTT
Found at i:4322 original size:26 final size:26
Alignment explanation
Indices: 4283--4351 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
4273 TTATTTTCTC
* * *
4283 TTTCTCTTTCTCTTCTTTTTTTC-TTT
1 TTTCTTTTTTTCTT-TTTCTTTCATTT
4309 TTTCTTTTTTTCTTTTTCTTTCATTT
1 TTTCTTTTTTTCTTTTTCTTTCATTT
*
4335 TTCTCATTTTTTCTTTT
1 TT-TCTTTTTTTCTTTT
4352 CATTTTTCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 7 0.19
26 17 0.46
27 13 0.35
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (26 bp):
TTTCTTTTTTTCTTTTTCTTTCATTT
Found at i:4323 original size:32 final size:35
Alignment explanation
Indices: 4276--4388 Score: 100
Period size: 32 Copynumber: 3.5 Consensus size: 35
4266 CCCCCTTTTA
* *
4276 TTTTCTCTTTCTCTTTCTC-TTC-TTTTTTTC-TT
1 TTTTCTTTTTCTCTTTCTCTTTCATTTTTCTCATT
* *
4308 TTTTCTTTTTTTCTTTTTCTTTCATTTTTCTCATT
1 TTTTCTTTTTCTCTTTCTCTTTCATTTTTCTCATT
*
4343 TTTTC-TTTTCAT-TTT-TCTATCA-TTTTC-CATT
1 TTTTCTTTTTC-TCTTTCTCTTTCATTTTTCTCATT
*
4374 TTCTCTTTTT-TCTTT
1 TTTTCTTTTTCTCTTT
4389 TCATTTTTTC
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
30 1 0.01
31 11 0.16
32 25 0.37
33 9 0.13
34 14 0.21
35 8 0.12
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.74
Consensus pattern (35 bp):
TTTTCTTTTTCTCTTTCTCTTTCATTTTTCTCATT
Found at i:4327 original size:34 final size:35
Alignment explanation
Indices: 4283--4384 Score: 99
Period size: 34 Copynumber: 3.1 Consensus size: 35
4273 TTATTTTCTC
*
4283 TTTCTCTTTCTCTTC-TTTTTTTC-TTTTTTCTTTT
1 TTTCTCTTTCT-TTCATTTTTCTCATTTTTTCTTTT
*
4317 TTTCTTTTTCTTTCATTTTTCTCATTTTTTCTTTT
1 TTTCTCTTTCTTTCATTTTTCTCATTTTTTCTTTT
** * *
4352 CAT-T-TTTCTATCA-TTTTC-CATTTTCTCTTTT
1 TTTCTCTTTCTTTCATTTTTCTCATTTTTTCTTTT
4383 TT
1 TT
4385 CTTTTCATTT
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
31 12 0.21
32 5 0.09
33 11 0.19
34 18 0.31
35 12 0.21
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.75
Consensus pattern (35 bp):
TTTCTCTTTCTTTCATTTTTCTCATTTTTTCTTTT
Found at i:4337 original size:11 final size:11
Alignment explanation
Indices: 4313--4368 Score: 57
Period size: 11 Copynumber: 5.3 Consensus size: 11
4303 TTCTTTTTTC
4313 TTTT-TTTC-T
1 TTTTCTTTCAT
4322 TTTTCTTTCAT
1 TTTTCTTTCAT
4333 TTTTC--TCATT
1 TTTTCTTTCA-T
4343 TTTTCTTTTCAT
1 TTTTC-TTTCAT
*
4355 TTTTCTATCAT
1 TTTTCTTTCAT
4366 TTT
1 TTT
4369 CCATTTTCTC
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
9 7 0.17
10 10 0.25
11 14 0.35
12 6 0.15
13 3 0.08
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTCTTTCAT
Found at i:4368 original size:22 final size:21
Alignment explanation
Indices: 4322--4400 Score: 64
Period size: 22 Copynumber: 4.0 Consensus size: 21
4312 CTTTTTTTCT
*
4322 TTTTCTTTCATTTTTCTCATT
1 TTTTCTTTCATTTTTCTCATA
4343 TTTTCTTTTCATTTTTCT-ATCA
1 TTTTC-TTTCATTTTTCTCAT-A
*
4365 TTTTC---CA-TTTTCTC-TT
1 TTTTCTTTCATTTTTCTCATA
4381 TTTTCTTTTCATTTTT-TCAT
1 TTTTC-TTTCATTTTTCTCAT
4401 CTCTTCTTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
16 5 0.11
17 7 0.15
18 2 0.04
20 4 0.09
21 12 0.26
22 17 0.36
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTCTTTCATTTTTCTCATA
Found at i:4385 original size:33 final size:33
Alignment explanation
Indices: 4300--4389 Score: 107
Period size: 32 Copynumber: 2.8 Consensus size: 33
4290 TTCTCTTCTT
* *
4300 TTTTTCT-TTTTTCTTTTTTTCTTTTTCTTTCA
1 TTTTTCTCATTTTCTTTTTTTCTTTTTCTATCA
*
4332 TTTTTCTCATTTT-TTCTTTTCATTTTTCTATCA
1 TTTTTCTCATTTTCTTTTTTTC-TTTTTCTATCA
4365 -TTTTC-CATTTTCTCTTTTTTCTTTT
1 TTTTTCTCATTTTCT-TTTTTTCTTTT
4390 CATTTTTTCA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
31 6 0.12
32 24 0.48
33 20 0.40
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.76
Consensus pattern (33 bp):
TTTTTCTCATTTTCTTTTTTTCTTTTTCTATCA
Found at i:8624 original size:6 final size:6
Alignment explanation
Indices: 8613--8659 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
8603 TAAAGCAGTA
***
8613 CAAATG CAAATG TGGATG GCAAATG CAAATG CAAATG CAAATG CAAA
1 CAAATG CAAATG CAAATG -CAAATG CAAATG CAAATG CAAATG CAAA
8660 ATGTGTTAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
6 31 0.91
7 3 0.09
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (6 bp):
CAAATG
Found at i:10295 original size:17 final size:17
Alignment explanation
Indices: 10275--10307 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10265 AAAATGTTTT
10275 TTAATTTTAAATAAAAA
1 TTAATTTTAAATAAAAA
*
10292 TTAATTTTAATTAAAA
1 TTAATTTTAAATAAAA
10308 CGATAAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAATTTTAAATAAAAA
Found at i:11046 original size:2 final size:2
Alignment explanation
Indices: 11034--11075 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
11024 ATTACAATTA
11034 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11075 A
1 A
11076 CATACATACA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13215 original size:54 final size:54
Alignment explanation
Indices: 13157--13691 Score: 734
Period size: 54 Copynumber: 10.0 Consensus size: 54
13147 TAAGTGTTCA
* * *
13157 AACCCACAGAATTCATCATGTGTTGATGAACAACTGTACATGCACTATGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
** * *
13211 AACCCATGGATTTCATCATGAGTTGATGAACAACCGTACAGACACTATGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
* * * * * *
13265 AACTCACGGAATTCATCATAAGTTTATGAAAAACCGTACAGGAACTATGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
* * *
13319 AACTCACGGAATTCATCATGAGTTTATGAACAACCGTACAGGCACTATGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
*
13373 AACCCACAGAATTCATCATGAGTTGATGAACAACCGT-CAGGCACTATGTGTAC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
* * *
13426 AACCCACGGAATTCATCATGAGTTGATGAACAACAGTACAGGCACTACGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
* * *
13480 AACCCACAAAATTCATCATTAGTTGATGAATAACCGTACAGGCACTATGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
* *
13534 AACCCACAGAATTCATCATGAGTTGATG-ATAACCGTACAAGCACTATGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
* * * *
13587 AACTCACAAAATTCATCATGAGTTGATGAAC-ACCATACATGCACTATGTGTGC
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
* * * * * *
13640 AACTCACAGAATTCATCATGTGTTGATGAACGACAGTATAGGCACTACGTGT
1 AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGT
13692 TCATCTTAAT
Statistics
Matches: 431, Mismatches: 47, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
53 149 0.35
54 282 0.65
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (54 bp):
AACCCACAGAATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGC
Found at i:13517 original size:161 final size:162
Alignment explanation
Indices: 13157--13691 Score: 754
Period size: 161 Copynumber: 3.3 Consensus size: 162
13147 TAAGTGTTCA
* * ** *
13157 AACCCACAGAATTCATCATGTGTTGATGAACAACTGTACATGCACTATGTGTGCAACCCATGGAT
1 AACCCACAGAATTCATCATGTGTTGATGAACAACCGTACAGGCACTATGTGTGCAACCCACAGAA
* *
13222 TTCATCATGAGTTGATGAACAACCGTACAGACACTATGTGTGCAACTCACGGAATTCATCATAAG
66 TTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGCAACTCACGGAATTCATCATGAG
* * * *
13287 TTTATGAAAAACCGTACAGGAACTATGTGTGC
131 TTGATGAACAACAGTACAGGCACTATGTGTGC
* * * *
13319 AACTCACGGAATTCATCATGAGTTTATGAACAACCGTACAGGCACTATGTGTGCAACCCACAGAA
1 AACCCACAGAATTCATCATGTGTTGATGAACAACCGTACAGGCACTATGTGTGCAACCCACAGAA
* *
13384 TTCATCATGAGTTGATGAACAACCGT-CAGGCACTATGTGTACAACCCACGGAATTCATCATGAG
66 TTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGCAACTCACGGAATTCATCATGAG
*
13448 TTGATGAACAACAGTACAGGCACTACGTGTGC
131 TTGATGAACAACAGTACAGGCACTATGTGTGC
* *
13480 AACCCACAAAATTCATCAT-TAGTTGATGAATAACCGTACAGGCACTATGTGTGCAACCCACAGA
1 AACCCACAGAATTCATCATGT-GTTGATGAACAACCGTACAGGCACTATGTGTGCAACCCACAGA
* * **
13544 ATTCATCATGAGTTGATG-ATAACCGTACAAGCACTATGTGTGCAACTCACAAAATTCATCATGA
65 ATTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGCAACTCACGGAATTCATCATGA
* *
13608 GTTGATGAACACCA-TACATGCACTATGTGTGC
130 GTTGATGAACAACAGTACAGGCACTATGTGTGC
* * * * *
13640 AACTCACAGAATTCATCATGTGTTGATGAACGACAGTATAGGCACTACGTGT
1 AACCCACAGAATTCATCATGTGTTGATGAACAACCGTACAGGCACTATGTGT
13692 TCATCTTAAT
Statistics
Matches: 330, Mismatches: 40, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
160 66 0.20
161 182 0.55
162 82 0.25
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (162 bp):
AACCCACAGAATTCATCATGTGTTGATGAACAACCGTACAGGCACTATGTGTGCAACCCACAGAA
TTCATCATGAGTTGATGAACAACCGTACAGGCACTATGTGTGCAACTCACGGAATTCATCATGAG
TTGATGAACAACAGTACAGGCACTATGTGTGC
Found at i:18706 original size:23 final size:24
Alignment explanation
Indices: 18680--18730 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
18670 TTATTTAACA
*
18680 TTCACGAACATGTTTGTTTA-ATG
1 TTCACGAACATGTTTATTTATATG
* * *
18703 TTCATGAATATTTTTATTTATATG
1 TTCACGAACATGTTTATTTATATG
18727 TTCA
1 TTCA
18731 TTTAATATTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (24 bp):
TTCACGAACATGTTTATTTATATG
Found at i:19068 original size:38 final size:38
Alignment explanation
Indices: 18988--19061 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 38
18978 CTTACAAACA
*
18988 AGCTTGTTCATGAACATAAATGAAAGAGTCGATAAATG
1 AGCTTGTTCATGAACATAAACGAAAGAGTCGATAAATG
19026 AGCTTGTTCATGAACATAAACGAACA-AGTCGATAAA
1 AGCTTGTTCATGAACATAAACGAA-AGAGTCGATAAA
19062 ATAGCTTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 33 0.97
39 1 0.03
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (38 bp):
AGCTTGTTCATGAACATAAACGAAAGAGTCGATAAATG
Found at i:24679 original size:20 final size:20
Alignment explanation
Indices: 24645--24703 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
24635 TTTTATTTTA
* *
24645 TAATTATATATTATTTAAAT
1 TAATTATAAAATATTTAAAT
* ***
24665 TAATTATAAACTATTTTTTT
1 TAATTATAAAATATTTAAAT
24685 TGAATTATAAAATATTTAA
1 T-AATTATAAAATATTTAA
24704 TTTTTATATA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
TAATTATAAAATATTTAAAT
Found at i:24713 original size:186 final size:186
Alignment explanation
Indices: 24318--24703 Score: 639
Period size: 186 Copynumber: 2.1 Consensus size: 186
24308 ATTATCTTAA
*
24318 ATAAAATTTTAAATATATTATATATAACATATGGGCTCAGATCAAACCATTTAAAACTCAATTAA
1 ATAAAATTTTAAATATATTATATATAACATATGAGCTCAGATCAAACCATTTAAAACTCAATTAA
24383 TAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAA
66 TAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAA
* *
24448 TTTTTATTTTATAATTATATATTATTTAAATTAATTGTAAATTATTTTTCTAAATT
131 TTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTATTTTTCTAAATT
* * *
24504 AAAAAATTTTAAATATATTATATATAACATATGAGCTCAG-TCCAAATCATTTAAAACTTAATTA
1 ATAAAATTTTAAATATATTATATATAACATATGAGCTCAGAT-CAAACCATTTAAAACTCAATTA
* * *
24568 ATAATTTAAGATCTAATAACTTTTAAACCTAAATTAATATTAATTAATTAAAAAATTTATATAAA
65 ATAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAA
* *
24633 ATTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTATTTTTTTTGAATT
130 ATTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTA-TTTTTCTAAATT
24691 ATAAAATATTTAA
1 ATAAAAT-TTTAA
24704 TTTTTATATA
Statistics
Matches: 185, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
185 1 0.01
186 163 0.88
187 16 0.09
188 5 0.03
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.44
Consensus pattern (186 bp):
ATAAAATTTTAAATATATTATATATAACATATGAGCTCAGATCAAACCATTTAAAACTCAATTAA
TAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAA
TTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTATTTTTCTAAATT
Found at i:25871 original size:36 final size:36
Alignment explanation
Indices: 25812--26086 Score: 188
Period size: 36 Copynumber: 7.9 Consensus size: 36
25802 TATTGGTGTT
25812 TCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTC
1 TCAAGAGAGA-AAAATTTTGTTTCAAGGGAAACTGTC
* * **
25849 TCAAGAGAGATAAATTTTGTTTCAAGAGAAACAATC
1 TCAAGAGAGAAAAATTTTGTTTCAAGGGAAACTGTC
* *
25885 TCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTC
1 TCAAGAGAGA-AAAATTTTGTTTCAAGGGAAACTGTC
* * * * *
25922 TCCAGGGAGACGAAATTAAT-TTT-AAGGAAAACATGT-
1 TCAAGAGAGA-AAAATT-TTGTTTCAAGGGAAAC-TGTC
*
25958 TC-------AAATATTTTGTTTCAAGGGAAACTGTC
1 TCAAGAGAGAAAAATTTTGTTTCAAGGGAAACTGTC
* * *
25987 TCAAGAGAGACAAAA-TTCGTTTCAAGAGAAATTGTC
1 TCAAGAGAGA-AAAATTTTGTTTCAAGGGAAACTGTC
**
26023 TCAAGAGACG--AAA-TTTGTTTCAAATG-AACTGTC
1 TCAAGAGA-GAAAAATTTTGTTTCAAGGGAAACTGTC
* *
26056 TCAAG-GAGACAAAA-TTTGTTTTAAGAGAAAC
1 TCAAGAGAGA-AAAATTTTGTTTCAAGGGAAAC
26087 ATATTCAAAT
Statistics
Matches: 187, Mismatches: 32, Indels: 40
0.72 0.12 0.15
Matches are distributed among these distances:
27 1 0.01
28 10 0.05
29 11 0.06
31 1 0.01
32 2 0.01
33 11 0.06
34 26 0.14
35 3 0.02
36 69 0.37
37 53 0.28
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (36 bp):
TCAAGAGAGAAAAATTTTGTTTCAAGGGAAACTGTC
Found at i:25889 original size:73 final size:71
Alignment explanation
Indices: 25817--26087 Score: 256
Period size: 73 Copynumber: 3.9 Consensus size: 71
25807 GTGTTTCAAG
* *
25817 AGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAATTTTGTTTCAAGAGAAACA
1 AGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACA
25882 ATCTCAA
66 ATCTC-A
* * * * * ** *
25889 GAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGAAATTAATTTTAAG-G-AA-
1 -AGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAAC
25951 AA---CA
65 AATCTCA
* ** * *
25955 TG-TTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAAT
1 AGAGACAAA-ATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAAC
**
26019 TGTCTCA
65 AATCTCA
* ** *
26026 AGAGACGAAA-TTTGTTTCAAATG-AACTGTCTCAAG-GAGACAAAATTTGTTTTAAGAGAAACA
1 AGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACA
26088 TATTCAAATA
Statistics
Matches: 157, Mismatches: 33, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
64 4 0.03
65 42 0.27
66 2 0.01
67 3 0.02
68 23 0.15
69 12 0.08
70 13 0.08
71 6 0.04
72 4 0.03
73 48 0.31
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (71 bp):
AGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACA
ATCTCA
Found at i:25982 original size:138 final size:137
Alignment explanation
Indices: 25822--26369 Score: 489
Period size: 138 Copynumber: 3.9 Consensus size: 137
25812 TCAAGAGAGA
* * *
25822 CAAA-ATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAATTTTGTTTCAAGAGAAACAATCT
1 CAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCT
*
25886 CAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGAAATTAATTTTAAGGAA
66 CAAGAGAGACAAAA-TTAGTTTCAAAGGAAACTGTCTCCAGGGAGACGAAATTAATTTTAAGGAA
25951 AACATGTT
130 AACATGTT
***
25959 CAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAATTGTCT
1 CAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCT
* * * * * **
26024 C-A-AGAGACGAAATTTGTTTCAAATG-AACTGTCT-CAAGGAGACAAAATTTGTTTTAA-GAGA
66 CAAGAGAGACAAAATTAGTTTCAAAGGAAACTGTCTCCAGGGAGACGAAATTAATTTTAAGGA-A
*
26084 AACATATT
130 AACATGTT
* * * * * * ** * **
26092 CAAATATTGGTGTTTCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGA-GAGATAA
1 CAAATATT-TTGTTTCAAG-G-G---AAA--CTGTCTCAA--GAGA--G--ACAAAATTCGTTTC
** *
26156 AATTTGTTTCAAGAGAAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAG
52 AA---G--AGAA-----ACAATCTCAAGAGAGACAAAA-TTAGTTTCAAAGGAAACTGTCTCCAG
26221 GGAGACGAAATTAATTTTAAGGAAAACATGTT
106 GGAGACGAAATTAATTTTAAGGAAAACATGTT
**
26253 CAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACTGTCT
1 CAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCT
* * * *
26318 CAAGAGAGACGAAATTTGTTTCAAATGAAACTGTCTCAAGGGAGACGAAATT
66 CAAGAGAGACAAAATTAGTTTCAAAGGAAACTGTCTCCAGGGAGACGAAATT
26370 TAGTTCCAAA
Statistics
Matches: 318, Mismatches: 60, Indels: 66
0.72 0.14 0.15
Matches are distributed among these distances:
132 2 0.01
133 35 0.11
134 17 0.05
135 11 0.03
136 10 0.03
137 39 0.12
138 73 0.23
139 3 0.01
141 7 0.02
143 5 0.02
145 2 0.01
146 4 0.01
147 8 0.03
148 4 0.01
149 2 0.01
151 5 0.02
153 7 0.02
155 3 0.01
156 5 0.02
157 1 0.00
158 10 0.03
159 11 0.03
160 17 0.05
161 35 0.11
162 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.28
Consensus pattern (137 bp):
CAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCT
CAAGAGAGACAAAATTAGTTTCAAAGGAAACTGTCTCCAGGGAGACGAAATTAATTTTAAGGAAA
ACATGTT
Found at i:26037 original size:34 final size:34
Alignment explanation
Indices: 25966--26086 Score: 147
Period size: 34 Copynumber: 3.5 Consensus size: 34
25956 GTTCAAATAT
*
25966 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTC-A-AGAGACAAAA
* * *
26002 TTCGTTTCAAGAGAAATTGTCTCAAGAGACGAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGACAAAA
26036 TTTGTTTCAA-ATG-AACTGTCTCAAGGAGACAAAA
1 TTTGTTTCAAGA-GAAACTGTCTCAA-GAGACAAAA
*
26070 TTTGTTTTAAGAGAAAC
1 TTTGTTTCAAGAGAAAC
26087 ATATTCAAAT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
33 11 0.15
34 37 0.51
35 5 0.07
36 20 0.27
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (34 bp):
TTTGTTTCAAGAGAAACTGTCTCAAGAGACAAAA
Found at i:26045 original size:19 final size:19
Alignment explanation
Indices: 25992--26045 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 19
25982 CTGTCTCAAG
* *
25992 AGAGACAAAATTCGTTTC-
1 AGAGACGAAATTTGTTTCA
*
26010 A-AGA-GAAA-TTGTCTCA
1 AGAGACGAAATTTGTTTCA
26026 AGAGACGAAATTTGTTTCA
1 AGAGACGAAATTTGTTTCA
26045 A
1 A
26046 ATGAACTGTC
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
15 5 0.18
16 4 0.14
17 6 0.21
18 5 0.18
19 8 0.29
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.28
Consensus pattern (19 bp):
AGAGACGAAATTTGTTTCA
Found at i:26174 original size:36 final size:36
Alignment explanation
Indices: 26106--26549 Score: 397
Period size: 36 Copynumber: 12.6 Consensus size: 36
26096 TATTGGTGTT
*
26106 TCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTC
1 TCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTC
* **
26143 TCAAGAGAGATAAAATTTGTTTCAAGAGAAACAATC
1 TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
* *
26179 TCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTC
1 TCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTC
* * * ** *
26216 TCCAGGGAGACGAAATTAATTTTAAG-GAAAACATGT-
1 TCAAGAGAGACAAAATTTGTTTCAAGAG-AAAC-TGTC
* * *
26252 TC-----A-A-ATATTTTGTTTCAAGGGAAACTGTC
1 TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
*
26281 TCAAGAGAGACAAAATTCGTTTCAAGAGAAACTGTC
1 TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
*
26317 TCAAGAGAGACGAAATTTGTTTCAA-ATGAAACTGTC
1 TCAAGAGAGACAAAATTTGTTTCAAGA-GAAACTGTC
* * * *
26353 TCAAGGGAGACGAAATTTAGTTCCAAAAGAAACTGTC
1 TCAAGAGAGACAAAATTT-GTTTCAAGAGAAACTGTC
* * * *
26390 TCAA-AGGAGACGAAATTAGTTTTAAG-GAAAATAGAT-
1 TCAAGA-GAGACAAAATTTGTTTCAAGAGAAACT-G-TC
* *
26426 TC-A-A-AG----ATTTTGTTTCAAGGGAAACTGTC
1 TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
*
26455 TCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTC
1 TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
26491 TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
1 TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
*
26527 TCAAGAGAGATAAAACTTTGTTT
1 TCAAGAGAGACAAAA-TTTGTTT
26550 TGAGTAAATT
Statistics
Matches: 338, Mismatches: 41, Indels: 56
0.78 0.09 0.13
Matches are distributed among these distances:
28 4 0.01
29 28 0.08
30 8 0.02
31 2 0.01
32 2 0.01
33 2 0.01
34 1 0.00
35 10 0.03
36 196 0.58
37 84 0.25
38 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (36 bp):
TCAAGAGAGACAAAATTTGTTTCAAGAGAAACTGTC
Found at i:26305 original size:294 final size:297
Alignment explanation
Indices: 25741--26528 Score: 1183
Period size: 294 Copynumber: 2.6 Consensus size: 297
25731 AGGTTTTTTG
*
25741 TGTTTCAAGA-GAAACTGTCTCCAGGGAGACAAAATTTTGTTTTAAGAGAAACATATTCAAATAT
1 TGTTTCAA-ATGAAACTGTCT-CAAGGAGACAAAA-TTTGTTTTAAGAGAAACATATTCAAATAT
*
25805 TGGTGTTTCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAATTTTGTT
63 TGGTGTTTCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAAATTTGTT
25870 TCAAGAGAAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGA
128 TCAAGAGAAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGA
25935 AATTAATTTTAAGGAAAACATGTTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
193 AATTAATTTTAAGGAAAACATGTTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
*
26000 AATTCGTTTCAAGAGAAATTGTCTC-A-AGAGACGAAATT
258 AATTCGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATT
26038 TGTTTCAAATG-AACTGTCTCAAGGAGACAAAATTTGTTTTAAGAGAAACATATTCAAATATTGG
1 TGTTTCAAATGAAACTGTCTCAAGGAGACAAAATTTGTTTTAAGAGAAACATATTCAAATATTGG
26102 TGTTTCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAAATTTGTTTCA
66 TGTTTCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAAATTTGTTTCA
26167 AGAGAAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGAAAT
131 AGAGAAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGAAAT
26232 TAATTTTAAGGAAAACATGTTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
196 TAATTTTAAGGAAAACATGTTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
26297 TCGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATT
261 TCGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATT
* ** * * *
26334 TGTTTCAAATGAAACTGTCTCAAGGGAGACGAAATTTAGTTCCAAAAGAAAC-TGTCTCAAAGGA
1 TGTTTCAAATGAAACTGTCTCAA-GGAGACAAAATTT-GTTTTAAGAGAAACATAT-TCAAA-TA
** * * *
26398 GACGAAATTAGTTTTAAGGAAAATAGATTCAAAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGA
62 -TTG---GT-GTTTCAA-G---AGAGA--CAAA-ATTTTGTTTCAAGGGAAACTGTCTCAAGAGA
* * ** * *
26463 GACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGAGAAACTGTC
115 GATAAAATTTGTTTCAAGAGAAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTC
26527 TC
180 TC
26529 AAGAGAGATA
Statistics
Matches: 451, Mismatches: 20, Indels: 26
0.91 0.04 0.05
Matches are distributed among these distances:
294 247 0.55
295 13 0.03
296 32 0.07
297 20 0.04
298 14 0.03
299 16 0.04
300 1 0.00
301 1 0.00
304 1 0.00
305 6 0.01
306 1 0.00
309 4 0.01
311 25 0.06
312 70 0.16
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (297 bp):
TGTTTCAAATGAAACTGTCTCAAGGAGACAAAATTTGTTTTAAGAGAAACATATTCAAATATTGG
TGTTTCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAAATTTGTTTCA
AGAGAAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGAAAT
TAATTTTAAGGAAAACATGTTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
TCGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATT
Found at i:26316 original size:174 final size:174
Alignment explanation
Indices: 26106--26549 Score: 676
Period size: 174 Copynumber: 2.5 Consensus size: 174
26096 TATTGGTGTT
*
26106 TCAAGAGAGACAAAATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAGAG
1 TCAAGAGAGACAAAA-TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAG
** ** * *
26171 AAACAATCTCAAGAGAGACAAAACTTAGTTTCAAGGGAAACTGTCTCCAGGGAGACGAAATTAAT
65 AAACTGTCTCAAGAGAGACAAAACTTAGTTTCAAAAGAAACTGTCTCAAAGGAGACGAAATTAAT
*
26236 TTTAAGGAAAACATG-TTCAAATATTTTGTTTCAAGGGAAACTGTC
130 TTTAAGGAAAACA-GATTCAAAGATTTTGTTTCAAGGGAAACTGTC
* * *
26281 TCAAGAGAGACAAAATTCGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTTGTTTCAA-ATG
1 TCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGA-G
* * * * *
26345 AAACTGTCTCAAGGGAGACGAAATTTAGTTCCAAAAGAAACTGTCTCAAAGGAGACGAAATTAGT
65 AAACTGTCTCAAGAGAGACAAAACTTAGTTTCAAAAGAAACTGTCTCAAAGGAGACGAAATTAAT
*
26410 TTTAAGGAAAATAGATTCAAAGATTTTGTTTCAAGGGAAACTGTC
130 TTTAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAACTGTC
26455 TCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGA
1 TCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGA
* *
26520 AACTGTCTCAAGAGAGATAAAACTTTGTTT
66 AACTGTCTCAAGAGAGACAAAACTTAGTTT
26550 TGAGTAAATT
Statistics
Matches: 240, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
173 2 0.01
174 222 0.93
175 16 0.07
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (174 bp):
TCAAGAGAGACAAAATTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGA
AACTGTCTCAAGAGAGACAAAACTTAGTTTCAAAAGAAACTGTCTCAAAGGAGACGAAATTAATT
TTAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAACTGTC
Found at i:26458 original size:102 final size:102
Alignment explanation
Indices: 26272--26521 Score: 265
Period size: 102 Copynumber: 2.4 Consensus size: 102
26262 TGTTTCAAGG
* * *
26272 GAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACT-G-TCTCAAGAGAGACGAAATTT
1 GAAACTGTCTCAAGAGAGACAAAATTAGTTTCAAGAGAAAATAGAT-TC---A-A-A-G-ATTTT
* * *
26335 GTTTCAAATGAAACTGTCTCAAGGGAGACGAAATTTAGTTCCAAAA
58 GTTTCAAAGGAAACTGTCTCAAGAGAGACAAAATTT-GTTCCAAAA
* *
26381 GAAACTGTCTCAA-AGGAGACGAAATTAGTTTTAAG-GAAAATAGATTCAAAGATTTTGTTTCAA
1 GAAACTGTCTCAAGA-GAGACAAAATTAGTTTCAAGAGAAAATAGATTCAAAGATTTTGTTTCAA
* * **
26444 GGGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGG
65 AGGAAACTGTCTCAAGAGAGACAAAATTTGTTCCAAAA
*
26482 GAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAA
1 GAAACTGTCTCAAGAGAGACAAAATTAGTTTCAAGAGAAA
26522 CTGTCTCAAG
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
101 36 0.30
102 41 0.34
103 1 0.01
104 1 0.01
105 1 0.01
106 1 0.01
108 6 0.05
109 33 0.27
110 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (102 bp):
GAAACTGTCTCAAGAGAGACAAAATTAGTTTCAAGAGAAAATAGATTCAAAGATTTTGTTTCAAA
GGAAACTGTCTCAAGAGAGACAAAATTTGTTCCAAAA
Found at i:26517 original size:21 final size:21
Alignment explanation
Indices: 26455--26519 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 21
26445 GGAAACTGTC
26455 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
* *
26476 TCAAG-G-G---AAA-CTGTC
1 TCAAGAGAGACAAAATTTGTT
26491 TCAAGAGAGACAAAATTTGTT
1 TCAAGAGAGACAAAATTTGTT
26512 TCAAGAGA
1 TCAAGAGA
26520 AACTGTCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
15 8 0.24
16 4 0.12
17 1 0.03
19 1 0.03
20 4 0.12
21 16 0.47
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.25
Consensus pattern (21 bp):
TCAAGAGAGACAAAATTTGTT
Found at i:26565 original size:37 final size:34
Alignment explanation
Indices: 26446--26576 Score: 154
Period size: 36 Copynumber: 3.6 Consensus size: 34
26436 TGTTTCAAGG
*
26446 GAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTT--AGA
26482 GAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGA
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTT--AGA
* *
26518 GAAACTGTCTCAAGAGAGATAAAACTTTGTTTTGA
1 GAAACTGTCTCAAGAGAGACAAAA-TTTGTTTAGA
* *
26553 GTAAATTAGTCTCAAGCGAGACAA
1 G-AAACT-GTCTCAAGAGAGACAA
26577 CCCCCTTGTT
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
35 3 0.03
36 62 0.72
37 21 0.24
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.26
Consensus pattern (34 bp):
GAAACTGTCTCAAGAGAGACAAAATTTGTTTAGA
Found at i:28019 original size:96 final size:95
Alignment explanation
Indices: 27815--28079 Score: 361
Period size: 96 Copynumber: 2.7 Consensus size: 95
27805 GGCTAGCTGG
* *
27815 ATCCATAAAGTCGGGGCGTTTTAACCAATTGCTCTAGAGGGACATCTCAA-TATTATTGTATAGA
1 ATCCATAAAGTCGGGGCG-TTTAACCAATTGCTCTAGAGGGACAACTCAAGTTTTATTG--T--A
27879 TATTATAATCACCTTTATCAAGCTAGCTGAATATT
61 TATTATAATCACCTTTATCAAGCTAGCTGAATATT
* * *
27914 ATCCATAAAGCCAGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGTTTTATTGTACATTA
1 ATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGTTTTATTGTATATTA
* *
27979 TAATCACCTTTTATCAGGCTAGCTGAATCTT
66 TAATCACC-TTTATCAAGCTAGCTGAATATT
* * * *
28010 ATCCATAAAGTCGGGGCGTTTAACCAATTGCTTTAGAGGAACAGCTCAAGCTTTATTGTATATAT
1 ATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGTTTTATTGTATAT-T
28075 ATAAT
65 ATAAT
28080 ATTAAAATCT
Statistics
Matches: 149, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
95 13 0.09
96 76 0.51
97 7 0.05
98 30 0.20
99 23 0.15
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (95 bp):
ATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGTTTTATTGTATATTA
TAATCACCTTTATCAAGCTAGCTGAATATT
Found at i:30718 original size:29 final size:28
Alignment explanation
Indices: 30686--30781 Score: 69
Period size: 29 Copynumber: 3.4 Consensus size: 28
30676 AGAATAAAAC
30686 AATAAGAAAAATAAAAATAACAAGAAATA
1 AATAAGAAAAATAAAAATAA-AAGAAATA
*
30715 AATAA-ATAAAT--AAATCAAAAGAAA-A
1 AATAAGAAAAATAAAAAT-AAAAGAAATA
30740 AAT-AGAATAAA-AAATAGATAAAAAGAAATA
1 AATAAGAA-AAATAAA-A-AT-AAAAGAAATA
30770 AATCAAAGAAAA
1 AAT--AAGAAAA
30782 TCATGAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
24 1 0.02
25 5 0.09
26 13 0.25
27 3 0.06
28 6 0.11
29 15 0.28
30 4 0.08
32 2 0.04
33 4 0.08
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (28 bp):
AATAAGAAAAATAAAAATAAAAGAAATA
Found at i:30763 original size:12 final size:12
Alignment explanation
Indices: 30714--30763 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
30704 AACAAGAAAT
30714 AAATA-AATAAA
1 AAATAGAATAAA
* *
30725 TAAATCAAAAGAAA
1 -AAAT-AGAATAAA
30739 AAATAGAATAAA
1 AAATAGAATAAA
30751 AAATAG-ATAAA
1 AAATAGAATAAA
30762 AA
1 AA
30764 GAAATAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
11 7 0.21
12 16 0.48
13 5 0.15
14 5 0.15
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (12 bp):
AAATAGAATAAA
Found at i:31281 original size:21 final size:21
Alignment explanation
Indices: 31257--31383 Score: 184
Period size: 21 Copynumber: 6.0 Consensus size: 21
31247 TCCGAATTCG
31257 CGTTGCGATAGCACTGTTCAC
1 CGTTGCGATAGCACTGTTCAC
*
31278 CGTTGCGATAACACTGTTCAC
1 CGTTGCGATAGCACTGTTCAC
*
31299 CGTTGCGATAGCACTGATCAC
1 CGTTGCGATAGCACTGTTCAC
*
31320 CGTTGCGATAGCACTGATCAC
1 CGTTGCGATAGCACTGTTCAC
31341 CGTTGCGATAGCACTGTTCA-
1 CGTTGCGATAGCACTGTTCAC
* *
31361 CATTGCGAATTTGCACTGTTCAC
1 CGTTGCG-A-TAGCACTGTTCAC
31384 ATTGCGAATT
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
20 6 0.06
21 80 0.82
22 11 0.11
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (21 bp):
CGTTGCGATAGCACTGTTCAC
Found at i:31378 original size:22 final size:22
Alignment explanation
Indices: 31351--31396 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
31341 CGTTGCGATA
31351 GCACTGTTCACATTGCGAATTT
1 GCACTGTTCACATTGCGAATTT
31373 GCACTGTTCACATTGCGAATTT
1 GCACTGTTCACATTGCGAATTT
31395 GC
1 GC
31397 GATAGTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (22 bp):
GCACTGTTCACATTGCGAATTT
Found at i:31568 original size:16 final size:17
Alignment explanation
Indices: 31541--31592 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
31531 TTTATTTATG
31541 ATAAATTATAAATTTTAA
1 ATAAA-TATAAATTTTAA
*
31559 AT-AATATAAA-ATTAA
1 ATAAATATAAATTTTAA
*
31574 ATAAATATAAATTCTAA
1 ATAAATATAAATTTTAA
31591 AT
1 AT
31593 TATTTATGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 6 0.21
16 14 0.48
17 7 0.24
18 2 0.07
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAAATATAAATTTTAA
Found at i:31972 original size:16 final size:17
Alignment explanation
Indices: 31945--31996 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
31935 TTTATTTATG
31945 ATAAACTATAAATTTTAA
1 ATAAA-TATAAATTTTAA
*
31963 AT-AATATAAA-ATTAA
1 ATAAATATAAATTTTAA
*
31978 ATAAATATAAATTCTAA
1 ATAAATATAAATTTTAA
31995 AT
1 AT
31997 TATTTATGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 6 0.21
16 14 0.48
17 7 0.24
18 2 0.07
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (17 bp):
ATAAATATAAATTTTAA
Found at i:32119 original size:21 final size:21
Alignment explanation
Indices: 32095--32196 Score: 159
Period size: 21 Copynumber: 4.9 Consensus size: 21
32085 TTATAAAATT
32095 TGAACAGTGCTATCGCAACGG
1 TGAACAGTGCTATCGCAACGG
**
32116 TGAACAGTATTATCGCAACGG
1 TGAACAGTGCTATCGCAACGG
**
32137 TGAACAGTATTATCGCAACGG
1 TGAACAGTGCTATCGCAACGG
*
32158 TGAACAGTGCTATCGCAACTG
1 TGAACAGTGCTATCGCAACGG
32179 TGAACAGTGCTATCGCAA
1 TGAACAGTGCTATCGCAA
32197 TGATTTTGGA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 76 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (21 bp):
TGAACAGTGCTATCGCAACGG
Found at i:32262 original size:21 final size:21
Alignment explanation
Indices: 32204--32253 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
32194 CAATGATTTT
32204 GGACTATCGCAACGCGAATTC
1 GGACTATCGCAACGCGAATTC
32225 GGACTATCGCAACGCGAATTC
1 GGACTATCGCAACGCGAATTC
32246 GGACTATC
1 GGACTATC
32254 TCATTGCGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (21 bp):
GGACTATCGCAACGCGAATTC
Found at i:33648 original size:16 final size:16
Alignment explanation
Indices: 33627--33657 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33617 CGCTCACAAT
*
33627 TTTTAATTTTTTTATA
1 TTTTAAGTTTTTTATA
33643 TTTTAAGTTTTTTAT
1 TTTTAAGTTTTTTAT
33658 TCTCTATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTAAGTTTTTTATA
Found at i:36809 original size:26 final size:26
Alignment explanation
Indices: 36780--36831 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
36770 CATCTAACCA
36780 TTAACATTTATTTTATGCAATTTTTG
1 TTAACATTTATTTTATGCAATTTTTG
36806 TTAACATTTATTTTATGCAATTTTTG
1 TTAACATTTATTTTATGCAATTTTTG
36832 CCATTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.58
Consensus pattern (26 bp):
TTAACATTTATTTTATGCAATTTTTG
Found at i:40952 original size:27 final size:27
Alignment explanation
Indices: 40921--40972 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
40911 CCTTTATTAC
*
40921 AAAGAATATACGTGATTGGTTGAATGT
1 AAAGAATATACGTGATTGGTCGAATGT
*
40948 AAAGAATATATGTGATTGGTCGAAT
1 AAAGAATATACGTGATTGGTCGAAT
40973 CGGATATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (27 bp):
AAAGAATATACGTGATTGGTCGAATGT
Found at i:43106 original size:200 final size:197
Alignment explanation
Indices: 42695--43201 Score: 635
Period size: 200 Copynumber: 2.5 Consensus size: 197
42685 TTTTCTAAGT
* * *
42695 AAACCGATATATTTATACCGGTAACATTGCAAATTTACCCATTACATTATAATTATCGGTTTCGA
1 AAACCGATATATTTATACAGGT-ACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
* * * * * * *
42760 TATTTTTTGGATCGATACAATTT--TAAATGTATCAACACTTTAGGCATGCACCTCGTTGGGCAT
65 T-GTTTTGGGATCGATAC-TTTTAATAAATGTATCGACATTTTATGCATGCACCCCGTTGGGCAT
* * *
42823 TCATTCTGAAAAAAAGTATCGACACAAACTTAAAAAGTGTCGATACATTATTTATACCTATTTTC
128 TCATTATGAAAAAAAGTATCGACACAAACTTAAAAAGTGTCAATACATTATTTAGACCTATTTTC
42888 TCATA
193 TCATA
* * * * * *
42893 CAACCGATATATTTCTATCGGGTACATTGTAAATTTACATATCACATTGTAATTATCGGTTTCGA
1 AAACCGATATATTTATA-CAGGTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
* * *
42958 TGTTTGTGGGATCGATACTTTTAATAAATGTATCGACATTTTATGCGTGCACCCCGTTTGTCATT
65 TGTTT-TGGGATCGATACTTTTAATAAATGTATCGACATTTTATGCATGCACCCCGTTGGGCATT
* * ** *
43023 CATTATGGACAAAAAGTATCGACACAAATTTAAATGGTGTCAATACTTTATGTT-GACCTATTTT
129 CATTAT-GAAAAAAAGTATCGACACAAACTTAAAAAGTGTCAATACATTAT-TTAGACCTATTTT
43087 CTTC-TA
192 C-TCATA
* *
43093 AAACCGGTATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
1 AAACCGATATATTTATA-CAGGTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGA
43158 TGTTATTGGGATCGATACTTTTAATAAATGTATCGACATTTTAT
65 TGTT-TTGGGATCGATACTTTTAATAAATGTATCGACATTTTAT
43202 ATTATGGACA
Statistics
Matches: 266, Mismatches: 35, Indels: 14
0.84 0.11 0.04
Matches are distributed among these distances:
197 6 0.02
198 64 0.24
199 43 0.16
200 148 0.56
201 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (197 bp):
AAACCGATATATTTATACAGGTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
GTTTTGGGATCGATACTTTTAATAAATGTATCGACATTTTATGCATGCACCCCGTTGGGCATTCA
TTATGAAAAAAAGTATCGACACAAACTTAAAAAGTGTCAATACATTATTTAGACCTATTTTCTCA
TA
Found at i:44348 original size:199 final size:199
Alignment explanation
Indices: 44001--44755 Score: 1021
Period size: 199 Copynumber: 3.8 Consensus size: 199
43991 TTAAAAACGA
*
44001 ATCAACACAAATTT-AAAAGTGTCGATACATTATGTTAACATATTTTCTCATAAAACCGGTATAT
1 ATCAACACAAATTTAAAAAGTGTCGATACATTATGTT-ACCTATTTTCTCATAAAACCGGTATAT
*
44065 TTATAACGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTTTTGGAT
65 TTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTTTTGGAT
* * *
44130 CGATACTTTTTATAAATGTATCGACACTTTATGCGTGCACCCCGTTTTGCATTCATTCTGGACAA
130 CGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCTCGTTTAGCATTCATTCTGGACAA
44195 AATGT
195 AATGT
* *
44200 ATCAACACAAATATAAAAAGTGTCGATACATTATGTTCACCTATTTTCTCATAAAACCGGTATAC
1 ATCAACACAAATTTAAAAAGTGTCGATACATTATGTT-ACCTATTTTCTCATAAAACCGGTATAT
* * *
44265 TTATACCGGTGACATTGTAAATTTACCTATT-CATTATAATTATCGGTTTCGATG-TTTTTGAGA
65 TTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTTTTG-GA
* * *
44328 TCGATACTTTTTAAAAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCATTCATTATGGACA
129 TCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCTCGTTTAGCATTCATTCTGGACA
44393 AAATGT
194 AAATGT
* *
44399 ATCGACACAAATTTAAACAA-TTTCGATACATTATGTATACCTATTTTCTCATAAAACCGGTATA
1 ATCAACACAAATTTAAA-AAGTGTCGATACATTATGT-TACCTATTTTCTCATAAAACCGGTATA
* * *
44463 TTTATATTGGTTACATTGTAAATTTACCTATTACATTATAATTTTCAGTTTCAATGTTTTTTGGA
64 TTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTTTTGGA
* * * * ** ** *
44528 TCGATACAATTTT--AAATGTATCGACACTTTTATGCGTGAAGCTCGTTGAG-A-AAAGGCTCAG
129 TCGATAC-TTTTTAAAAATGTATCGACAC-TTTATGCGTGCACCTCGTTTAGCATTCATTCT-GG
*
44589 ACAAAAAGT
191 ACAAAATGT
* * * ** * *
44598 ATCGACATAAATTTAAAAGGTGTCGAT--ATGCTG--ACCTATTTGCTCATAAAATCGGTATATT
1 ATCAACACAAATTTAAAAAGTGTCGATACATTATGTTACCTATTTTCTCATAAAACCGGTATATT
* *
44659 TATATCGGTCACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTTGATGTTTTTTGGATC
66 TATATCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTTTTGGATC
44724 GATACTTTTTAAAAATGTATCGACACTTTATG
131 GATACTTTTTAAAAATGTATCGACACTTTATG
44756 GGAAACTTTA
Statistics
Matches: 496, Mismatches: 48, Indels: 29
0.87 0.08 0.05
Matches are distributed among these distances:
193 4 0.01
194 97 0.20
195 14 0.03
197 4 0.01
198 9 0.02
199 233 0.47
200 125 0.25
201 10 0.02
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (199 bp):
ATCAACACAAATTTAAAAAGTGTCGATACATTATGTTACCTATTTTCTCATAAAACCGGTATATT
TATATCGGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGTTTTTTGGATC
GATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCTCGTTTAGCATTCATTCTGGACAAA
ATGT
Found at i:45013 original size:18 final size:18
Alignment explanation
Indices: 44990--45026 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44980 CGAAATTTAT
44990 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
45008 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
45026 A
1 A
45027 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:52561 original size:20 final size:20
Alignment explanation
Indices: 52536--52573 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
52526 TTTTGGTGCA
*
52536 GAGGGAATCGATACCCCCAT
1 GAGGGAACCGATACCCCCAT
*
52556 GAGGGAACCGATTCCCCC
1 GAGGGAACCGATACCCCC
52574 TTTGAAGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.26, T:0.13
Consensus pattern (20 bp):
GAGGGAACCGATACCCCCAT
Found at i:53983 original size:26 final size:26
Alignment explanation
Indices: 53947--54003 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
53937 TGAAATTGTT
* *
53947 GAAACCGTAAATCTTGTTCCTAACAA
1 GAAACCATAAATCTTATTCCTAACAA
53973 GAAACCATAAATCTTATTCCTAACAA
1 GAAACCATAAATCTTATTCCTAACAA
53999 GAAAC
1 GAAAC
54004 TCTGTTCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.25
Consensus pattern (26 bp):
GAAACCATAAATCTTATTCCTAACAA
Found at i:65025 original size:125 final size:124
Alignment explanation
Indices: 64705--65008 Score: 466
Period size: 124 Copynumber: 2.4 Consensus size: 124
64695 AAGTTGTGAT
* * * *
64705 ATGTTGGGGCGCGACTGAACCCACATCATGTTGAGAAGACAAGATTCAGACCAAGGAGGTATTAA
1 ATGTTGGGGCGAGACTGAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAGGAGGTATTAA
* * *
64770 GAATGAGCCTTACAATTTGAGGTGTTGGGGCATTTTGATGCCCGTACCAGTATAAGATA
66 GAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTGAGGCCCGTACCAGTATAAGATA
* *
64829 ATGTTGGGGC-ATGACTGAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAGGAGGCATAA
1 ATGTTGGGGCGA-GACTGAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAGGAGGTATTA
* *
64893 AGAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTGAAGGCCCTTACCAGTGTAAGATA
65 AGAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTG-AGGCCCGTACCAGTATAAGATA
**
64954 ATGTTGGGGCGAGACCAAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAG
1 ATGTTGGGGCGAGACTGAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAG
65009 AAATTATTGA
Statistics
Matches: 164, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
124 93 0.57
125 70 0.43
126 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (124 bp):
ATGTTGGGGCGAGACTGAACCCACGTCATGTTGAGATGAAAAGATTCAGACCAAGGAGGTATTAA
GAATGAGCCTCACAATTTGAGGTGATGGGGCATTTTGAGGCCCGTACCAGTATAAGATA
Found at i:65775 original size:36 final size:37
Alignment explanation
Indices: 65735--65969 Score: 218
Period size: 36 Copynumber: 6.5 Consensus size: 37
65725 AGGTCAATCT
65735 TAAGCCTTCACCGAAGAGA-AGTGAAGCAAACCATCC
1 TAAGCCTTCACCGAAGAGATAGTGAAGCAAACCATCC
* *
65771 TAAGCCTTCACTGGAGA-ATAGTGAAGCAAACCAT-C
1 TAAGCCTTCACCGAAGAGATAGTGAAGCAAACCATCC
* * *
65806 TGAAGCCTTCACCGGAGA-ATAGTGAAGCAATCAAT-C
1 T-AAGCCTTCACCGAAGAGATAGTGAAGCAAACCATCC
* *
65842 TGAAGCCTTCACCGGAGA-ATAGTGAAGCAAACCATCA
1 T-AAGCCTTCACCGAAGAGATAGTGAAGCAAACCATCC
* *
65879 TAAGTCTTCACC--AGAGAGTAGTGAAGCAAACCATCT
1 TAAGCCTTCACCGAAGAGA-TAGTGAAGCAAACCATCC
* * * * **
65915 TAAGTCTTCACCAAAAAG-TAGTGAAGCAGATCCATTT
1 TAAGCCTTCACCGAAGAGATAGTGAAGCA-AACCATCC
* *
65952 TAAGCCTTCTCAGAAGAG
1 TAAGCCTTCACCGAAGAG
65970 TGTTGGAACA
Statistics
Matches: 173, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
34 3 0.02
35 4 0.02
36 143 0.83
37 20 0.12
38 3 0.02
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (37 bp):
TAAGCCTTCACCGAAGAGATAGTGAAGCAAACCATCC
Found at i:65853 original size:72 final size:70
Alignment explanation
Indices: 65735--65926 Score: 251
Period size: 72 Copynumber: 2.7 Consensus size: 70
65725 AGGTCAATCT
* *
65735 TAAGCCTTCACCGAAGAGA-AGTGAAGCAAACCATCCTAAGCCTTCACTGGAGAATAGTGAAGCA
1 TAAGCCTTCACCGGAGA-ATAGTGAAGCAAACCAT-CTAAGCCTTCACCGGAGAATAGTGAAGCA
65799 AACCATC
64 AACCATC
* *
65806 TGAAGCCTTCACCGGAGAATAGTGAAGCAATCAATCTGAAGCCTTCACCGGAGAATAGTGAAGCA
1 T-AAGCCTTCACCGGAGAATAGTGAAGCAAACCATCT-AAGCCTTCACCGGAGAATAGTGAAGCA
65871 AACCATC
64 AACCATC
* * * *
65878 ATAAGTCTTCACCAGAGAGTAGTGAAGCAAACCATCTTAAGTCTTCACC
1 -TAAGCCTTCACCGGAGAATAGTGAAGCAAACCATC-TAAGCCTTCACC
65927 AAAAAGTAGT
Statistics
Matches: 106, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
71 4 0.04
72 100 0.94
73 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (70 bp):
TAAGCCTTCACCGGAGAATAGTGAAGCAAACCATCTAAGCCTTCACCGGAGAATAGTGAAGCAAA
CCATC
Found at i:65937 original size:72 final size:69
Alignment explanation
Indices: 65735--65960 Score: 245
Period size: 72 Copynumber: 3.1 Consensus size: 69
65725 AGGTCAATCT
* * *
65735 TAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCCTAAGCCTTCACTGGAGAATAGTGAAGCAA
1 TAAGCCTTCACCG-AGAGTAGTGAAGCAAACCATCTTAAGCCTTCAC-CGAGAATAGTGAAGCAA
65800 ACCATC
64 ACCATC
* * * *
65806 TGAAGCCTTCACCGGAGAATAGTGAAGCAATCAATCTGAAGCCTTCACCGGAGAATAGTGAAGCA
1 T-AAGCCTTCACC-GAGAGTAGTGAAGCAAACCATCTTAAGCCTTCACC-GAGAATAGTGAAGCA
65871 AACCATC
63 AACCATC
* * * *
65878 ATAAGTCTTCACCAGAGAGTAGTGAAGCAAACCATCTTAAGTCTTCACCAAAAAGTAGTGAAGCA
1 -TAAGCCTTCACC-GAGAGTAGTGAAGCAAACCATCTTAAGCCTTCACCGAGAA-TAGTGAAGCA
* *
65943 GATCCATTT
63 -AACCA-TC
65952 TAAGCCTTC
1 TAAGCCTTC
65961 TCAGAAGAGT
Statistics
Matches: 129, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
71 4 0.03
72 110 0.85
73 14 0.11
74 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.20
Consensus pattern (69 bp):
TAAGCCTTCACCGAGAGTAGTGAAGCAAACCATCTTAAGCCTTCACCGAGAATAGTGAAGCAAAC
CATC
Found at i:65937 original size:108 final size:109
Alignment explanation
Indices: 65728--65969 Score: 310
Period size: 108 Copynumber: 2.2 Consensus size: 109
65718 TGGAGCAAGG
* **
65728 TCAATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCCTAAGCCTTCACTGGAGAATAGT
1 TCAATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCATAAGCCTTCACCAGAGAATAGT
* *
65793 GAAGCAAACCATCTGAAGCCTTCACCGGAGAATAGTGAAGCA-A
66 GAAGCAAACCATCTGAAGCCTTCACCGAAAAATAGTGAAGCAGA
* * * *
65836 TCAATCTGAAGCCTTCACCGGAGA-ATAGTGAAGCAAACCATCATAAGTCTTCACCAGAGAGTAG
1 TCAATCTTAAGCCTTCACCGAAGAGA-AGTGAAGCAAACCATCATAAGCCTTCACCAGAGAATAG
* *
65900 TGAAGCAAACCATCTTAAGTCTTCACC-AAAAAGTAGTGAAGCAGA
65 TGAAGCAAACCATCTGAAGCCTTCACCGAAAAA-TAGTGAAGCAGA
* * * *
65945 TCCATTTTAAGCCTTCTCAGAAGAG
1 TCAATCTTAAGCCTTCACCGAAGAG
65970 TGTTGGAACA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
107 4 0.04
108 90 0.80
109 19 0.17
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (109 bp):
TCAATCTTAAGCCTTCACCGAAGAGAAGTGAAGCAAACCATCATAAGCCTTCACCAGAGAATAGT
GAAGCAAACCATCTGAAGCCTTCACCGAAAAATAGTGAAGCAGA
Found at i:66406 original size:51 final size:51
Alignment explanation
Indices: 66330--66726 Score: 462
Period size: 51 Copynumber: 7.7 Consensus size: 51
66320 GTGAAGCAAA
* * * *
66330 TGAAGATATGCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCTAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTT
* *
66381 TGAAGATGTTCGAGTTCTATACTCCTTAAAGGAAGAAGGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTT
* *
66432 TGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTT
1 TGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTT
* * *
66483 TGAAGA-GATGTCTGAGTTCTATACTCCCTAGAGAAAGACGGAGCGAACCCGTG
1 TGAAGATG-T-TC-GAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTT
* * * *
66536 TGAAGATATCCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCAG-T
1 TGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCC-GTT
* * *
66587 TGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG--
1 TGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTT
* *
66636 TGAAGAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGT
1 TG-A-AGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCC--GT-T
* *
66692 TGAAGATTGTTCGAG-TCTTGTACTCTCTAAAGAAA
1 TGAAGA-TGTTCGAGTTC-TATACTCCCTAAAGAAA
66727 TAGGGGGCAG
Statistics
Matches: 305, Mismatches: 27, Indels: 24
0.86 0.08 0.07
Matches are distributed among these distances:
49 2 0.01
50 3 0.01
51 223 0.73
52 4 0.01
53 42 0.14
54 5 0.02
55 24 0.08
56 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (51 bp):
TGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTT
Found at i:66628 original size:155 final size:153
Alignment explanation
Indices: 66340--66685 Score: 507
Period size: 155 Copynumber: 2.2 Consensus size: 153
66330 TGAAGATATG
* * * * *
66340 CGAGTTCTATACTCCTTAAAGAAAGAAGGAGCTAACCCGTTTGAAGATGTTCGAGTTCTATACTC
1 CGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTGTGAAGATATCCGAGTTCTATACTC
* * *
66405 CTTAAAGGAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAG
66 CCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGAAG
66470 GAGCGAACCCGTTTGAAGAGATG-T
131 GAGCGAACCCG--TGAAGAGATGTT
* *
66494 CTGAGTTCTATACTCCCTAGAGAAAGACGGAGCGAACCCGTGTGAAGATATCCGAGTTCTATACT
1 C-GAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTGTGAAGATATCCGAGTTCTATACT
* * *
66559 CCCTGAAGAAAGAGGGAGCGAACCCAG-TTGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGA
65 CCCTAAAGAAAGAAGGAGCGAACCC-GTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGA
*
66623 GGGAGCGAACCCGTGAAGAGATGTT
129 AGGAGCGAACCCGTGAAGAGATGTT
*
66648 CGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCC
1 CGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCC
66686 ATTTGTTGAA
Statistics
Matches: 173, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
153 45 0.26
154 3 0.02
155 124 0.72
156 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (153 bp):
CGAGTTCTATACTCCCTAAAGAAAGAAGGAGCGAACCCGTGTGAAGATATCCGAGTTCTATACTC
CCTAAAGAAAGAAGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGAAG
GAGCGAACCCGTGAAGAGATGTT
Found at i:66722 original size:55 final size:54
Alignment explanation
Indices: 66644--67009 Score: 359
Period size: 55 Copynumber: 6.7 Consensus size: 54
66634 CGTGAAGAGA
* * * *
66644 TGTTCGAGT-TCTATACTCCCTAAAGAAAGAGGGAGC-GAACCCATTTGTTGAAGAT
1 TGTTCGAGTCT-TATACTCTCTAAAGAAATAGGGGGCAG-ACCCA-TCGTTGAAGAT
* *
66699 TGTTCGAGTCTTGTACTCTCTAAAGAAATAGGGGGCAGACGCGATCGTTGAAGAT
1 TGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGAC-CCATCGTTGAAGAT
* * * * **
66754 ATATT-GAGTCTTTTACTCTCTGAAGATATAGGGGGCAGACATAATCGTTGAAGAT
1 -TGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGAC-CCATCGTTGAAGAT
* * * * *
66809 CGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGAT
1 TGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGAC-CCATCGTTGAAGAT
* * * *
66864 TG-T-GGGTCTTATACTCTCTAAAGATATAGGGGGCAGACACGATCATTGAAGAT
1 TGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGAC-CCATCGTTGAAGAT
* * * *
66917 TGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGAT
1 TGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGAC-CCATCGTTGAAGAT
* *
66972 TG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 TGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGAC
67010 ACGATTGTTA
Statistics
Matches: 266, Mismatches: 38, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
53 79 0.30
54 5 0.02
55 175 0.66
56 7 0.03
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (54 bp):
TGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGACCCATCGTTGAAGAT
Found at i:66894 original size:53 final size:55
Alignment explanation
Indices: 66692--67072 Score: 427
Period size: 55 Copynumber: 7.0 Consensus size: 55
66682 ACCCATTTGT
* * * * *
66692 TGAAGATTGTTCGAGTCTTGTACTCTCTAAAGAAATAGGGGGCAGACGCGATCGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGA
* * * ** * *
66747 TGAAGATATATT-GAGTCTTTTACTCTCTGAAGATATAGGGGGCAGACATAATCGT
1 TGAAGAT-TGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGA
* *
66802 TGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGA
* * * *
66857 TGAAGATTG-T-GGGTCTTATACTCTCTAAAGATATAGGGGGCAGACACGA-TCA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGA
*
66909 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 -TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGA
* *
66965 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGA
* * * * *
67018 TAAAGATTATTCGCGT-TCCATACTC-CTTGGAAGCAATAGGGGGCAGACACGATTG
1 TGAAGATTGTTCGAGTCT-TATACTCTC-T-GAAGAAATAGGGGGCAGACACGATTG
67073 TTAAAAAAAT
Statistics
Matches: 280, Mismatches: 35, Indels: 21
0.83 0.10 0.06
Matches are distributed among these distances:
52 2 0.01
53 91 0.32
54 8 0.03
55 149 0.53
56 30 0.11
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (55 bp):
TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGA
Found at i:66926 original size:108 final size:108
Alignment explanation
Indices: 66690--67072 Score: 527
Period size: 108 Copynumber: 3.5 Consensus size: 108
66680 GAACCCATTT
* * * *
66690 GTTGAAGATTGTTCGAGTCTTGTACTCTCTAAAGAAATAGGGGGCAGACGCGATCGTTGAAGATA
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGAT-
* * * **
66755 TATTGAGTCTTTTACTCTCTGAAGATATAGGGGGCAGACATAATC
65 T-GTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACGATC
*
66800 GTTGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATT
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATT
*
66865 GTGGGTCTTATACTCTCTAAAGATATAGGGGGCAGACACGATC
66 GTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACGATC
*
66908 ATTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATT
1 GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATT
* *
66973 GTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATT
66 GTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACGATC
* * * * * *
67016 GTTAAAGATTATTCGCGT-TCCATACTC-CTTGGAAGCAATAGGGGGCAGACACGATTG
1 GTTGAAGATTGTTCGAGTCT-TATACTCTC-T-GAAGAAATAGGGGGCAGACGCGATTG
67073 TTAAAAAAAT
Statistics
Matches: 247, Mismatches: 23, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
107 2 0.01
108 161 0.65
109 25 0.10
110 59 0.24
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (108 bp):
GTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATT
GTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACGATC
Found at i:72070 original size:199 final size:199
Alignment explanation
Indices: 71708--73237 Score: 1890
Period size: 200 Copynumber: 7.7 Consensus size: 199
71698 TTTTAAAATG
** * * * * * *
71708 GTATCGACACAAATTTTACAATTGTCGATACTTTATGCT-GACCTATTTTCTCATAAAACTGTTA
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATG-TAGACCTATTCTCTCATAAAACCGGTA
* * * * * *
71772 TATTTATACCTGTTACATTGAAAATTTACATATTACATTATAATTATCGATTTCGATATTTTTGG
65 TATTTATACCGGTTACATTGAAAA-TTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGG
* * *
71837 GATCGAAACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGACATTCTTTCTGGA
129 GATCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTCTGGA
71902 CAAAAA
194 CAAAAA
* *
71908 GTATCGACACAAATTCCAAAAGTGTCGATACATTTTGTAGACCTATTCTCTCATAAAACTGGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
* ** *
71973 ATTTATACCGGTTACATTGAAATTTACCTATTACATTATAATTATTTGTTTCGATGTTTTTGGGA
66 ATTTATACCGGTTACATTGAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGA
* *
72038 TCGACACTTTTTAAAAATGTATCGATACTTTATGGGTGCACCCTTTTGGGCATTCCTTCTGGACA
131 TCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTCTGGACA
72103 AAAA
196 AAAA
* * * * *
72107 GTATCGATACAAATTCCACAAGTGTCGATACA-TATTTAGACATATTTTCTCATAAAACCGGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
* * ** * *
72171 ATTTATACCGATTACATTGAAATTTACCTATTACATTATAATTATCTGTTTCGATATTTTTGGGA
66 ATTTATACCGGTTACATTGAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGA
* * *
72236 TCGACACTTTTTAAAAATGTATTGACACTTTATGGGTGCACCTTTTTGGGCATTCCTTCTGGACA
131 TCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTCTGGACA
72301 AAAA
196 AAAA
* * * * * * *
72305 GTATCGAAATAAAAT--ACATGTGTCGATACATT-T-TAGACCTATTCTCGCATAAAACCGATAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
* *
72366 ATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATCATGGGTTTCGATGTATCTGGG
66 ATTTATACCGGTTACATTG-AAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
* ** * *
72431 ATCGATACTTTTTCCAAATGTATCGACACTTTATGCGTGCACCATTTTTTTTGGGCATTCATTCT
130 ATCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACC----CTTTTGGGCATTCATTCT
*
72496 GGACAAAAT
191 GGACAAAAA
* * * *
72505 GTATCAACACAAAATT-TAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATC-GTA
1 GTATCGACAC-AAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTA
* * ** ** * *
72568 TATTTATACCGGTTATATTACAAAATTGTCTATTTTATTATAATTATGGGATTCGATGTCTCTGG
65 TATTTATACCGGTTACATT-GAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGG
* * * * *
72633 GATCGACACTTTTTAAAAATGCATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCTGAA
129 GATCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTCTGGA
72698 CAAAAA
194 CAAAAA
* * * * * * * ****
72704 TTATCGACACCAATTTCAAAAGTGTCAATGCATTATGTAGATCTATTCTCACATAAAACATACAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
* *
72769 ATTTATACCGGTTACATTATAAAATTACCTATTACATTATAATTATGGGTTTCGATGTCTCTGGG
66 ATTTATACCGGTTACATT-GAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
* *
72834 ATCGACACTTTTAAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCCTTCTGGAC
130 ATCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTCTGGAC
72899 AAACAA
195 AAA-AA
* *
72905 -TATCGACACAAATTCCAGAAGTGTCAATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
* * * * * * *
72969 AGTTATACCGGTTACATTGTAAATTTACATATAACATTATAATTATGGGTTTTGATATTTCAGGG
66 ATTTATACCGGTTACATTG-AAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
* * * * *
73034 ATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTCTGGAC
130 ATCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTCTGGAC
73099 AAAAA
195 AAAAA
* * * *
73104 GTATCAACACCAATTTCAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAACCGGTAT
1 GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
* * * * * *
73169 ATTTATACCGATTATATTACAAAATTACCCATTACATTATAATTATGGGGTTCGATGTTTTTGGG
66 ATTTATACCGGTTACATT-GAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGG
73234 ATCG
130 ATCG
73238 TTCGATGTTT
Statistics
Matches: 1161, Mismatches: 151, Indels: 36
0.86 0.11 0.03
Matches are distributed among these distances:
195 42 0.04
196 91 0.08
197 1 0.00
198 171 0.15
199 205 0.18
200 512 0.44
201 6 0.01
202 15 0.01
203 97 0.08
204 21 0.02
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (199 bp):
GTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTAT
ATTTATACCGGTTACATTGAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGA
TCGACACTTTTTAAAAATGTATCGACACTTTATGGGTGCACCCTTTTGGGCATTCATTCTGGACA
AAAA
Found at i:73242 original size:19 final size:19
Alignment explanation
Indices: 73218--73256 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
73208 TAATTATGGG
73218 GTTCGATGTTTTTGGGATC
1 GTTCGATGTTTTTGGGATC
73237 GTTCGATGTTTTTGGGATC
1 GTTCGATGTTTTTGGGATC
73256 G
1 G
73257 ATACTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.33, T:0.46
Consensus pattern (19 bp):
GTTCGATGTTTTTGGGATC
Found at i:73649 original size:19 final size:19
Alignment explanation
Indices: 73625--73673 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
73615 TTACATTCAC
73625 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
73644 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
73663 ATACAAAATTA
1 ATACAAAATTA
73674 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:75468 original size:33 final size:33
Alignment explanation
Indices: 75431--75530 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
75421 CCATCTTAAG
*
75431 TTCACCCCTCAACACCTCAATTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
*
75464 TTCACCCCTCAACACTTCAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
* *
75497 TTCACCCCTCAGCACCTCAACTTCTTTCATCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
75530 T
1 T
75531 CAATCTATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.23, C:0.45, G:0.01, T:0.31
Consensus pattern (33 bp):
TTCACCCCTCAACACCTCAACTTCTTTCACCAC
Found at i:75499 original size:18 final size:18
Alignment explanation
Indices: 75447--75500 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
75437 CCTCAACACC
*
75447 TCAATTTCTTTCACCACT
1 TCAACTTCTTTCACCACT
** *
75465 TC-AC--CCCTCAACACT
1 TCAACTTCTTTCACCACT
75480 TCAACTTCTTTCACCACT
1 TCAACTTCTTTCACCACT
75498 TCA
1 TCA
75501 CCCCTCAGCA
Statistics
Matches: 26, Mismatches: 7, Indels: 6
0.67 0.18 0.15
Matches are distributed among these distances:
15 10 0.38
16 2 0.08
17 1 0.04
18 13 0.50
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.35
Consensus pattern (18 bp):
TCAACTTCTTTCACCACT
Found at i:75588 original size:21 final size:21
Alignment explanation
Indices: 75564--75628 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
75554 CCCCTTATTC
**
75564 CTCTCAAGCGTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
75585 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
75606 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
75627 CT
1 CT
75629 TGATTGTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.14, C:0.35, G:0.11, T:0.40
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:78318 original size:182 final size:182
Alignment explanation
Indices: 78011--78682 Score: 1024
Period size: 182 Copynumber: 3.7 Consensus size: 182
78001 TACGTGTACC
* * *
78011 TATTAAAGTATCGACACTTTCAATATATCC-AGTAGCTCTTTACCGGTTTTGTCATTTCGAGACC
1 TATTAAAGTATCGACACTTTCAATATATCCGA-TAGCTCTATACCGGTTTTGTCCTTTAGAGACC
* *
78075 GGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTTTATAAAGTATCGACAT
65 GGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACAC
* *
78140 TTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTTGATACTTA
130 TTTATAGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * * *
78193 TATTAAAGTATTGACACTTTCAATATATCTGGTCGCTCTATACCGGTTTTGTCCTTTAGAGATCG
1 TATTAAAGTATCGACACTTTCAATATATCCGATAGCTCTATACCGGTTTTGTCCTTTAGAGACCG
* * * *
78258 ATTTTATCATATTTTTACCTGTTATATTGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACACT
*
78323 TTATAGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGCCGATACTTA
131 TTATAGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * *
78375 TATTAAAGTATCGACACTTTCAATATATCTGATCGCTCTATATCGGTTTTGTCCTTTAGAGACCG
1 TATTAAAGTATCGACACTTTCAATATATCCGATAGCTCTATACCGGTTTTGTCCTTTAGAGACCG
* *
78440 GTTTTGTCATATTTTTACCTGTTATATCATTGTGGATCGATACATTGTTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACACT
* *
78505 TTATAGACGCTAAAAATGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
131 TTATAGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * *
78557 TATTAAAGTATCGACACTTTCAATATATCCGATAGCGT-TTTACCGGTTTTGTCTTTTCGAGGCC
1 TATTAAAGTATCGACACTTTCAATATATCCGATAGC-TCTATACCGGTTTTGTCCTTTAGAGACC
* * * *
78621 GGTTTTGTCATATTTTTACCTGTTATATTGATATGGATCAATACATTTTTATAAAGTATCGA
65 GGTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGA
78683 TATAAACCGA
Statistics
Matches: 447, Mismatches: 41, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
182 446 1.00
183 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAATATATCCGATAGCTCTATACCGGTTTTGTCCTTTAGAGACCG
GTTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTGTTATAAAGTATCGACACT
TTATAGGCGCTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
Found at i:80777 original size:60 final size:60
Alignment explanation
Indices: 80719--81090 Score: 415
Period size: 60 Copynumber: 6.2 Consensus size: 60
80709 CCATAGCCAG
80719 CACCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACAGCCACCAGC
1 CACCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCA-C-CA-CCACCA-C
80783 ACAACCACCA-CAACTGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCA-CA
1 -C-ACCA-CAGC--C-GCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACCA
80846 -
60 C
*
80846 -A-C-C-G-C-C-GCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAAC
1 CACCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACCAC
* * *
80899 CGCCACAACCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAAC
1 CACCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACCAC
* * *
80959 CGCCACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAAC
1 CACCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACCAC
* * * * * * ** *
81019 CGCCACTGCCGCTACTCTTCACCATGTTTCCACATCCGGCACCACAACCACCA-CAGCCAC
1 CACCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCA-CCAC
*
81079 CACCACAACCGC
1 CACCACAGCCGC
81091 CACAGCCGCT
Statistics
Matches: 273, Mismatches: 18, Indels: 37
0.83 0.05 0.11
Matches are distributed among these distances:
51 43 0.16
52 2 0.01
54 1 0.00
55 1 0.00
56 1 0.00
57 1 0.00
58 1 0.00
59 4 0.01
60 162 0.59
65 3 0.01
66 8 0.03
67 4 0.01
68 2 0.01
69 40 0.15
ACGTcount: A:0.28, C:0.50, G:0.09, T:0.13
Consensus pattern (60 bp):
CACCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACCAC
Found at i:80950 original size:69 final size:60
Alignment explanation
Indices: 80902--81141 Score: 255
Period size: 60 Copynumber: 3.9 Consensus size: 60
80892 CCACAACCGC
* *
80902 CACAACCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCGC
1 CACAGCCGCTGCTATTCACCATGCTTCCACAACCGCCACCACAGCCACCACCACAACCGC
* *
80962 CACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCGC
1 CACAGCCGCTGCTATTCACCATGCTTCCACAACCGCCACCACAGCCACCACCACAACCGC
* * * * *
81022 CACTGCCGCTACTCTTCACCATGTTTCCACATCCGGCACCACAACCACCACAGCCACCACCACAA
1 CACAGCCGCTGCTATTCACCATGCTTCCACA------A-C-C-GCCACCACAGCCACCACCACAA
81087 CCGC
57 CCGC
* * * * * * *
81091 CACAGCCGCTGCTCTTCATCACGTTTCCACATCCGGCACCACAACCACCAC
1 CACAGCCGCTGCTATTCACCATGCTTCCACAACCGCCACCACAGCCACCAC
81142 TTTTTACAAT
Statistics
Matches: 155, Mismatches: 16, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
60 98 0.63
61 1 0.01
62 1 0.01
66 1 0.01
67 1 0.01
68 1 0.01
69 52 0.34
ACGTcount: A:0.26, C:0.50, G:0.10, T:0.14
Consensus pattern (60 bp):
CACAGCCGCTGCTATTCACCATGCTTCCACAACCGCCACCACAGCCACCACCACAACCGC
Found at i:81013 original size:120 final size:120
Alignment explanation
Indices: 80721--81141 Score: 455
Period size: 120 Copynumber: 3.4 Consensus size: 120
80711 ATAGCCAGCA
*
80721 CCACAGCCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACAGCCACCAGCACA
1 CCACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAG----C-CA-CCA-C--CACA
* *
80786 ACCACCACAACTGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCA-C-C-A---
57 ACCGCCACAACCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCG
80844 -CA-A-CCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCGCCACA
1 CCACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCGCCACA
80906 ACCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCG
66 ACCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCG
*
80961 CCACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCGCCACT
1 CCACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCGCCACA
* * * * *
81026 GCCGCTACTCTTCACCATGTTTCCACATCCGGCACCACAACCACCACAGCCACCACCACAACCG
66 ACCGCTGCTATTCACCATGCTTCCACA------A-C-C-TCCACCACAGCCACCACCACAACCG
* * * * * * ** *
81090 CCACAGCCGCTGCTCTTCATCACGTTTCCACATCCGGCACCACAACCACCAC
1 CCACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCAC
81142 TTTTTACAAT
Statistics
Matches: 262, Mismatches: 18, Indels: 30
0.85 0.06 0.10
Matches are distributed among these distances:
111 57 0.22
112 1 0.00
113 2 0.01
114 4 0.02
115 2 0.01
116 1 0.00
118 2 0.01
119 1 0.00
120 119 0.45
121 1 0.00
122 2 0.01
126 1 0.00
127 1 0.00
128 1 0.00
129 67 0.26
ACGTcount: A:0.27, C:0.50, G:0.10, T:0.14
Consensus pattern (120 bp):
CCACAGCCGCCGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCGCCACA
ACCGCTGCTATTCACCATGCTTCCACAACCTCCACCACAGCCACCACCACAACCG
Found at i:81073 original size:21 final size:21
Alignment explanation
Indices: 81058--81097 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
81048 CCACATCCGG
81058 CACCACAACCACCACAGCCAC
1 CACCACAACCACCACAGCCAC
*
81079 CACCACAACCGCCACAGCC
1 CACCACAACCACCACAGCC
81098 GCTGCTCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.57, G:0.07, T:0.00
Consensus pattern (21 bp):
CACCACAACCACCACAGCCAC
Found at i:85901 original size:32 final size:33
Alignment explanation
Indices: 85815--85907 Score: 104
Period size: 32 Copynumber: 2.9 Consensus size: 33
85805 AAATTTGAAA
* * *
85815 AGTTATAAAATGGTCATTAAAC-TTATC-ATTT
1 AGTTACAAAATGATCATTAAACTTTATCAAATT
* * *
85846 CGTTAC-AAATAATCATTATACTTTATCAAATT
1 AGTTACAAAATGATCATTAAACTTTATCAAATT
85878 AG-TACAAAATGATCATTAAACTTTATCAAA
1 AGTTACAAAATGATCATTAAACTTTATCAAA
85908 CTACTATATA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
30 12 0.24
31 12 0.24
32 26 0.52
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (33 bp):
AGTTACAAAATGATCATTAAACTTTATCAAATT
Found at i:85921 original size:32 final size:32
Alignment explanation
Indices: 85852--85922 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
85842 ATTTCGTTAC
* * * *
85852 AAATAATCATTATACTTTATCAAATTAGTACA
1 AAATGATCATTAAACTTTATCAAACTACTACA
*
85884 AAATGATCATTAAACTTTATCAAACTACTATA
1 AAATGATCATTAAACTTTATCAAACTACTACA
*
85916 TAATGAT
1 AAATGAT
85923 TCGTAAACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (32 bp):
AAATGATCATTAAACTTTATCAAACTACTACA
Found at i:85972 original size:21 final size:21
Alignment explanation
Indices: 85948--86000 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
85938 ATTTTACACT
* *
85948 ATTTTATAATGTACGATGATC
1 ATTTTATAATATAAGATGATC
85969 ATTTTATAATATAAGATGATC
1 ATTTTATAATATAAGATGATC
85990 ATTTTATAATA
1 ATTTTATAATA
86001 ATTTTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (21 bp):
ATTTTATAATATAAGATGATC
Found at i:86014 original size:19 final size:18
Alignment explanation
Indices: 85992--86036 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
85982 AGATGATCAT
85992 TTTATAATAATTTTATAAA
1 TTTATAATAATTTTAT-AA
* *
86011 TTTAATGATCATTTTATAA
1 TTT-ATAATAATTTTATAA
86030 TTTATAA
1 TTTATAA
86037 AAAATTAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 3 0.14
19 8 0.36
20 11 0.50
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
TTTATAATAATTTTATAA
Found at i:86311 original size:18 final size:18
Alignment explanation
Indices: 86275--86314 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
86265 TTTTAAATTT
** *
86275 TAAAAAATTATTTATATA
1 TAAAAAATTATAAACATA
86293 TAAAAAATTATAAACATA
1 TAAAAAATTATAAACATA
86311 TAAA
1 TAAA
86315 TCCAATCCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAAAAATTATAAACATA
Found at i:87701 original size:2 final size:2
Alignment explanation
Indices: 87689--87722 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
87679 AACTCCCATC
87689 AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87723 AGCAAAGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:88369 original size:39 final size:39
Alignment explanation
Indices: 88325--88409 Score: 107
Period size: 39 Copynumber: 2.2 Consensus size: 39
88315 AATCCTCAGG
* * * * **
88325 TCATCTTTGGATCCTCAAATTCGTTTCCAAATGCTCAAA
1 TCATCTTTAGACCCTCAAATTCATTTCCAAATCCAAAAA
*
88364 TCATCTTTAGACCCTCAAATTCATTTTCAAATCCAAAAA
1 TCATCTTTAGACCCTCAAATTCATTTCCAAATCCAAAAA
88403 TCATCTT
1 TCATCTT
88410 AAAACCTTAG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (39 bp):
TCATCTTTAGACCCTCAAATTCATTTCCAAATCCAAAAA
Done.