genome.fa.s2267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002267.1 Hibiscus syriacus cultivar Beakdansim tig00004612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65234

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1641--1679	2	20.0	2	94	5	71	51	0	0	48	1.00
4727--4827	45	2.2	46	87	1	141	34	23	23	17	1.96
4727--4827	23	4.4	23	82	2	114	34	23	23	17	1.96
4946--5072	45	2.8	45	84	0	164	37	18	5	39	1.74
5057--5117	16	3.6	16	79	14	68	50	16	6	26	1.69
13646--13786	60	2.3	60	76	9	144	41	7	21	29	1.80
18936--18986	23	2.2	23	100	0	102	37	7	5	49	1.56
20357--20398	16	2.6	16	80	0	57	47	26	4	21	1.70
20609--20653	22	2.0	22	91	0	72	26	37	13	22	1.91
27354--27391	16	2.4	16	95	0	67	50	26	0	23	1.50
27876--28046	66	2.6	67	86	0	236	30	16	13	39	1.87
27994--28147	36	4.4	36	75	13	142	25	21	13	38	1.90
27928--28147	103	2.1	102	83	4	264	27	19	14	39	1.89
28023--28345	65	4.9	65	82	6	334	27	21	12	39	1.89
31135--31171	16	2.2	17	90	4	58	32	5	5	56	1.45
32012--32080	28	2.5	28	77	15	72	75	2	7	14	1.13
32096--32175	3	27.3	3	75	14	78	63	0	2	33	1.08
32099--32204	18	6.8	15	76	19	60	60	0	1	37	1.08
32097--32175	22	3.7	22	70	20	60	63	0	2	34	1.08
32169--32203	2	18.0	2	94	5	63	51	0	0	48	1.00
33278--33620	36	9.6	34	76	13	216	43	5	4	46	1.48
33278--33620	74	4.8	71	73	18	189	43	5	4	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33649--33689	2	21.0	2	85	5	57	48	0	4	46	1.23
39228--39709	136	3.5	136	80	6	449	25	22	16	36	1.94
40676--40792	20	5.7	20	65	9	56	29	21	23	24	1.99
40670--40799	42	3.1	41	81	3	152	30	23	21	25	1.99
40794--41106	54	5.8	54	79	5	249	40	16	9	34	1.80
40854--41094	108	2.2	109	86	4	321	41	17	9	32	1.80
40852--41106	54	4.8	53	81	3	253	41	16	9	33	1.80
41274--41313	4	10.0	4	88	0	62	30	0	20	50	1.49
41274--41313	12	3.3	12	96	0	71	30	0	20	50	1.49
43593--43636	9	4.8	9	81	13	54	4	20	0	75	0.98
43630--43704	9	8.8	8	77	12	60	6	8	0	85	0.75
43630--43714	11	7.5	11	76	16	75	5	9	0	84	0.76
43589--43714	18	7.1	17	73	19	96	5	14	0	80	0.89
43630--43714	1	85.0	1	70	0	53	5	9	0	84	0.76
45045--45097	20	2.7	20	96	0	97	41	18	18	20	1.91
45045--45130	20	4.3	20	86	4	75	46	15	18	19	1.84
47469--47532	2	32.0	2	100	0	128	50	0	0	50	1.00
57628--57789	60	2.7	60	83	7	213	29	16	12	41	1.85
59797--59849	21	2.5	21	78	6	63	20	24	18	35	1.95
59839--59890	21	2.5	21	81	3	61	40	17	21	21	1.91
59879--60013	20	6.7	20	83	5	128	30	25	19	25	1.98
60239--60263	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60488--60543	20	2.8	20	94	0	94	39	21	23	16	1.92
60567--60620	14	3.5	14	75	22	54	11	22	20	46	1.82
60549--60619	33	2.2	33	81	0	79	19	21	21	38	1.94
62196--62286	42	2.2	42	86	2	130	24	15	38	21	1.92
62669--62715	19	2.5	19	82	0	67	46	19	19	14	1.84
62685--62778	33	2.8	33	83	0	125	50	22	15	11	1.77
62774--62870	19	5.6	19	71	22	97	12	19	21	46	1.83
62796--62854	14	3.9	14	76	20	64	10	16	23	49	1.77
62779--62870	33	2.8	33	98	0	175	11	18	21	47	1.80
62855--62909	20	2.8	19	83	8	65	16	23	23	36	1.94
63450--63497	18	2.7	18	93	0	87	14	12	45	27	1.81
64804--64876	20	3.7	20	81	1	67	43	23	16	16	1.87

Tables:   1

The End!