genome.fa.s2268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002268.1 Hibiscus syriacus cultivar Beakdansim tig00004613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128637

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3414--3476	30	2.1	31	93	3	110	39	17	17	25	1.91
4638--4691	28	2.0	28	85	3	74	48	5	12	33	1.65
5095--5149	21	2.6	21	83	8	67	67	0	1	30	1.01
5124--5148	13	1.9	13	100	0	50	64	0	0	36	0.94
5120--5163	19	2.3	19	84	11	63	65	2	0	31	1.05
9494--9643	69	2.2	66	75	20	159	24	8	3	64	1.37
9681--9726	3	15.3	3	82	17	60	34	0	0	65	0.93
9685--9734	15	3.3	15	94	5	84	38	0	0	62	0.96
9681--9732	18	2.9	18	94	2	88	36	0	0	63	0.95
10111--10156	24	1.9	24	82	8	58	15	10	2	71	1.23
10209--10242	10	3.4	10	92	8	52	11	0	0	88	0.52
11425--11468	21	2.0	22	83	12	56	18	4	4	72	1.19
11528--11574	22	2.1	22	88	7	69	65	6	8	19	1.41
12629--12721	21	4.5	21	78	4	100	39	18	24	17	1.91
12629--12721	41	2.3	41	100	0	186	39	18	24	17	1.91
12648--12782	41	3.3	41	82	6	132	38	20	21	19	1.94
12710--12823	20	5.7	20	84	2	111	32	25	17	24	1.97
12707--12823	41	2.9	41	83	1	137	34	24	17	23	1.96
13399--13544	19	8.1	19	73	17	114	13	22	21	42	1.87
13432--13519	33	2.6	33	92	1	140	12	23	25	38	1.90
13487--13545	20	3.0	20	80	9	66	16	22	18	42	1.89
15543--15665	42	2.9	42	80	2	122	22	36	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15599--15665	21	3.2	21	66	6	55	23	35	20	19	1.95
17013--17048	14	2.6	14	95	0	63	30	0	25	44	1.54
17155--17208	20	2.8	19	88	5	81	48	20	18	12	1.81
17213--17363	19	8.7	19	68	21	116	14	23	19	43	1.87
17271--17362	33	2.7	34	86	6	125	16	21	19	42	1.89
19657--19681	12	2.1	12	100	0	50	0	28	0	72	0.86
20970--21027	20	2.9	20	94	0	98	37	22	22	17	1.93
21051--21104	14	3.5	14	77	22	63	11	20	20	48	1.80
21033--21103	33	2.2	33	84	0	88	19	19	21	39	1.93
21046--21123	33	2.4	33	91	0	120	14	23	20	42	1.88
23095--23160	20	3.3	20	86	0	78	42	25	16	15	1.87
23154--23211	14	3.4	18	71	24	54	46	22	18	12	1.82
23170--23227	14	3.9	14	79	16	71	48	25	17	8	1.75
23154--23232	32	2.4	33	95	2	142	46	24	18	10	1.80
23261--23318	14	3.9	14	79	16	71	10	17	24	48	1.78
23244--23334	32	2.8	33	93	3	157	12	18	20	48	1.80
23319--23373	20	2.8	19	83	8	65	16	23	23	36	1.94
23855--23899	18	2.5	18	88	0	72	13	15	44	26	1.83
25221--25258	20	1.9	20	88	0	58	50	21	15	13	1.78
25522--25565	22	2.0	22	95	0	79	18	15	45	20	1.85
25753--25846	20	4.7	20	80	2	89	23	18	24	34	1.96
25773--25850	41	1.9	41	86	0	111	21	16	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25733--25847	20	5.7	20	78	5	88	23	17	23	35	1.95
25836--25928	20	4.5	21	72	4	82	16	23	19	40	1.90
25836--25928	41	2.3	41	94	0	168	16	23	19	40	1.90
28043--28223	91	1.9	92	83	8	233	27	19	9	44	1.81
30656--30694	21	1.9	20	84	5	51	7	33	10	48	1.66
33612--33726	24	4.8	24	87	7	153	40	19	15	25	1.91
33588--33743	48	3.2	48	76	7	120	43	19	12	24	1.86
42313--42352	21	1.9	21	89	0	62	25	40	25	10	1.86
45817--45852	13	2.8	13	100	0	72	16	27	47	8	1.75
45793--45856	7	8.8	8	74	25	54	23	26	37	12	1.90
65650--65801	72	2.1	72	81	6	175	33	19	15	30	1.93
67654--67731	23	3.3	23	85	1	102	32	23	19	25	1.98
67738--67955	103	2.1	103	95	0	391	36	22	13	26	1.92
68568--68641	19	3.6	19	71	15	58	18	28	24	28	1.98
68610--68766	63	2.5	64	81	9	185	27	20	19	33	1.96
70926--70953	2	14.0	2	100	0	56	50	0	0	50	1.00
71735--71830	27	3.6	27	74	16	85	43	4	1	51	1.28
74978--75032	26	2.0	30	86	13	82	40	5	0	54	1.23
79794--79838	21	2.1	21	83	0	54	42	6	2	48	1.41
86052--86198	76	1.9	76	88	2	224	34	6	2	57	1.37
89605--89671	20	3.3	20	97	0	125	34	25	19	20	1.96
89692--89864	20	8.6	20	84	7	226	38	23	16	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89665--89864	40	5.0	40	82	8	237	40	22	15	22	1.91
89665--89864	60	3.3	60	82	6	201	40	22	15	22	1.91
90360--90413	20	2.7	19	80	8	63	14	14	22	48	1.81
92559--92650	21	4.4	21	76	13	91	23	36	19	19	1.95
92549--92650	42	2.4	43	78	12	122	24	37	17	20	1.94
94028--94167	66	2.2	62	87	7	194	30	0	17	50	1.51
94226--94263	20	1.9	20	94	0	67	42	21	15	21	1.89
94304--94342	20	2.0	20	89	0	60	12	20	28	38	1.89
94556--94642	39	2.2	39	91	0	138	17	13	20	48	1.81
94952--94988	18	2.1	18	94	0	65	51	8	5	35	1.55
95443--95483	20	2.0	20	90	0	64	34	19	21	24	1.97
98253--98286	12	2.8	12	90	0	50	14	0	29	55	1.40
99045--99123	20	4.0	20	89	0	113	22	18	21	36	1.95
99129--99175	20	2.3	20	88	0	67	23	17	23	36	1.95
99172--99238	21	3.2	21	97	0	125	37	17	25	19	1.94
103480--103519	6	6.7	6	100	0	80	35	0	65	0	0.93
104118--104699	190	3.2	180	86	9	812	40	13	16	29	1.87
104428--104464	19	1.9	19	100	0	74	48	13	16	21	1.80
104616--104661	20	2.3	19	82	10	65	52	10	17	19	1.74
106882--106925	21	2.1	21	91	0	70	40	11	31	15	1.83
106959--107024	33	2.0	33	90	0	105	33	1	45	19	1.60
108220--108788	4	142.2	4	99	0	1129	25	0	24	49	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109635--110596	200	4.8	200	90	2	1405	37	15	15	32	1.89
113572--113940	198	1.9	201	85	1	519	36	14	15	33	1.88
116307--117015	200	3.5	197	80	6	721	38	14	15	31	1.87
117117--117181	23	2.8	23	95	0	112	36	21	4	36	1.74
117237--117284	16	2.7	18	75	18	55	33	22	6	37	1.80
122210--122329	58	2.0	60	82	3	145	34	25	5	35	1.80
126168--126220	3	18.3	3	86	7	74	66	0	1	32	1.03
126168--126219	20	2.6	20	87	0	77	67	0	1	30	1.02
126172--126216	23	2.0	23	90	0	72	68	0	2	28	1.01
127050--127256	41	5.0	41	78	12	183	25	15	6	53	1.65
127046--127255	81	2.5	80	78	10	208	24	16	6	52	1.67
127047--127344	44	7.0	42	76	12	177	24	18	7	49	1.73
128318--128355	2	19.0	2	100	0	76	50	0	0	50	1.00

Tables:   1

The End!