genome.fa.s2269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002269.1 Hibiscus syriacus cultivar Beakdansim tig00004614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95239

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508--533	2	13.0	2	100	0	52	50	0	0	50	1.00
4699--4748	23	2.1	23	88	3	73	62	6	12	20	1.50
7544--7611	35	1.9	35	87	0	100	29	20	26	23	1.99
7543--7631	20	4.8	20	73	16	82	28	19	29	23	1.98
7854--7895	22	1.9	22	85	0	57	54	9	9	26	1.63
15959--16036	7	10.0	8	74	22	51	38	1	1	58	1.14
15911--16262	150	2.4	148	91	5	554	38	3	0	56	1.21
16105--16157	18	2.6	22	75	19	62	37	0	0	62	0.96
16112--16173	18	3.4	18	75	22	67	35	0	0	64	0.94
16059--16177	57	2.1	57	80	9	136	37	1	0	60	1.07
16091--16173	36	2.4	34	82	8	96	36	1	0	62	1.03
16247--16304	13	4.3	13	77	16	64	39	0	0	60	0.97
16255--16308	16	3.3	16	77	12	56	40	0	0	59	0.98
16126--16397	131	2.1	125	91	6	429	38	3	0	57	1.18
16377--16450	33	2.2	34	83	4	89	35	0	1	63	1.03
17826--18483	182	3.6	180	82	5	720	42	13	17	27	1.86
24524--24579	24	2.5	22	77	13	60	37	0	10	51	1.37
26286--26807	198	2.6	196	80	5	561	38	14	15	31	1.88
26802--26964	87	1.9	87	93	0	281	31	14	12	41	1.82
26885--26936	23	2.3	23	82	0	68	38	13	7	40	1.73
27504--27566	20	3.2	20	100	0	126	53	4	9	31	1.54
27277--27783	277	1.8	277	97	0	969	39	10	10	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29063--29207	59	2.4	59	85	10	181	33	17	16	33	1.92
30264--30345	40	2.1	40	95	2	148	36	6	9	47	1.61
33233--33272	21	1.9	21	89	0	62	30	10	10	50	1.69
33494--33619	23	5.9	21	87	9	141	21	38	17	23	1.93
33494--33616	42	2.8	44	78	20	127	21	37	17	22	1.94
33935--33974	17	2.4	17	100	0	80	20	7	12	60	1.56
34370--34493	52	2.3	52	84	5	158	40	12	16	29	1.86
37558--37614	5	10.8	5	78	17	62	56	1	1	40	1.20
38445--38521	38	2.1	37	87	2	109	54	7	11	25	1.63
43494--43542	25	2.0	25	84	8	64	34	18	6	40	1.75
47544--47588	16	2.8	16	96	0	81	31	22	11	35	1.89
47541--47606	16	4.1	16	88	2	78	34	21	7	36	1.82
48426--48510	30	2.8	30	96	0	152	31	16	18	32	1.94
48676--48914	51	4.8	51	81	3	254	46	14	12	26	1.80
50207--50263	22	2.7	22	84	13	75	36	15	17	29	1.91
53844--53870	2	13.5	2	100	0	54	51	0	0	48	1.00
54532--54561	14	2.1	14	93	0	51	23	26	6	43	1.78
55674--55756	34	2.5	34	98	2	159	25	13	9	51	1.70
59804--59832	15	1.9	15	100	0	58	55	3	0	41	1.17
59974--60037	14	4.1	14	73	21	56	21	9	25	43	1.82
59972--60038	34	2.0	34	96	0	125	22	8	25	43	1.82
67079--67106	8	3.5	8	100	0	56	25	14	21	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69521--69600	31	2.6	31	85	0	106	46	13	3	36	1.62
71742--71886	71	2.1	71	94	2	258	28	12	4	54	1.56
72451--72487	19	2.0	19	94	5	67	45	10	16	27	1.80
72458--72497	19	2.1	19	86	9	55	55	7	12	25	1.63
76560--76652	31	3.1	31	82	13	99	38	5	2	53	1.36
76593--76650	27	2.1	27	87	12	84	37	8	0	53	1.32
76547--76719	30	5.9	28	72	21	101	36	6	2	53	1.43
76700--76758	22	2.6	23	84	10	77	42	1	0	55	1.09
76815--76871	28	2.0	28	86	0	78	52	1	7	38	1.39
77013--77077	31	2.1	31	94	0	112	67	3	4	24	1.24
77065--77120	28	2.0	27	83	10	69	48	0	5	46	1.25
78236--78275	18	2.2	18	86	8	55	30	27	22	20	1.98
84003--84046	21	2.1	21	95	0	79	25	27	22	25	2.00
84692--84727	18	2.0	18	88	0	54	27	27	22	22	1.99
85081--85176	47	2.1	45	82	3	111	34	15	3	46	1.62
90660--90761	27	3.8	27	88	5	145	44	10	13	31	1.79
94761--94796	18	2.0	18	88	0	54	66	0	0	33	0.92
94744--94784	21	2.0	21	86	13	59	65	2	2	29	1.18
94866--94918	22	2.4	21	77	17	54	64	0	1	33	1.05

Tables:   1

The End!