genome.fa.s2270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002270.1 Hibiscus syriacus cultivar Beakdansim tig00004616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96160

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47--148	21	4.9	21	93	0	159	22	24	21	31	1.98
250--278	13	2.1	14	93	6	51	34	0	0	65	0.93
827--870	22	2.0	22	100	0	88	36	18	22	22	1.95
870--963	21	4.5	21	91	4	154	26	24	27	21	1.99
870--963	41	2.2	42	92	3	154	26	24	27	21	1.99
1428--1487	19	3.1	19	75	13	59	13	8	3	75	1.16
1437--1511	24	3.2	23	78	16	73	16	6	2	74	1.14
1489--1526	16	2.4	16	86	8	51	13	5	5	76	1.13
2451--2519	36	1.9	36	85	5	95	28	7	39	24	1.82
4082--4341	96	2.7	96	86	4	362	33	17	17	31	1.93
5582--5699	35	3.4	33	88	8	103	27	20	13	38	1.90
5598--6035	36	12.5	35	74	15	338	26	20	13	39	1.89
5627--5690	21	3.4	21	64	28	61	25	21	12	40	1.88
5740--5884	35	4.0	37	85	7	181	24	21	15	39	1.91
5611--6183	173	3.4	175	83	8	726	27	20	12	39	1.89
5912--6038	37	3.5	36	83	2	164	23	21	14	40	1.89
5778--6028	138	1.8	135	89	2	394	25	20	13	39	1.90
6058--6335	36	7.9	35	72	13	187	27	20	12	39	1.88
5874--6190	161	2.0	161	86	3	451	29	19	12	39	1.88
5958--6126	88	1.9	87	85	6	225	28	19	11	40	1.86
5618--6404	299	2.6	297	90	5	1185	27	20	12	39	1.89
6034--6325	137	2.1	137	85	5	385	29	19	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6391--6472	30	2.5	33	81	16	109	42	18	7	31	1.77
6390--6478	33	2.8	31	81	13	101	40	19	8	31	1.82
7459--7814	186	2.0	181	89	6	549	42	2	7	46	1.46
13047--13120	38	1.9	38	91	5	123	24	18	13	43	1.86
18432--18968	54	10.0	54	89	0	752	25	18	21	33	1.97
18453--18968	269	1.9	269	89	0	798	25	18	22	34	1.96
21068--21124	2	29.0	2	89	3	89	45	0	3	50	1.18
21853--21885	17	1.9	17	93	0	57	45	0	0	54	0.99
23516--23544	6	4.8	6	100	0	58	13	17	17	51	1.76
27838--27933	7	13.1	7	74	23	67	76	0	17	6	0.99
27845--27952	32	3.4	31	79	12	110	74	0	20	5	1.02
27830--27939	39	3.1	35	83	16	129	75	0	18	6	1.01
27884--27958	25	3.0	25	79	11	73	76	0	20	4	0.95
28291--28343	27	2.0	27	100	0	106	30	24	18	26	1.98
29249--29334	37	2.3	36	92	4	145	44	18	18	18	1.87
29333--30013	55	12.6	53	77	10	498	32	16	20	30	1.95
29504--30068	110	5.2	109	82	6	619	32	17	20	30	1.95
29537--30068	218	2.4	219	86	4	666	32	16	19	31	1.95
29977--30081	55	1.9	55	92	0	174	31	19	20	29	1.96
31055--31082	2	14.0	2	100	0	56	50	0	0	50	1.00
33686--33753	33	2.1	33	97	0	127	38	11	5	44	1.65
35180--35337	21	7.6	21	68	13	112	22	20	20	36	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35186--35365	42	4.3	42	90	1	283	23	19	20	36	1.95
35205--35354	21	7.2	20	66	16	83	23	19	19	38	1.94
36234--36326	21	4.4	21	77	10	109	33	27	19	19	1.96
36225--36304	42	1.9	42	100	0	160	36	25	17	21	1.95
36222--36326	42	2.5	41	87	6	140	35	25	19	20	1.95
36338--36388	21	2.4	21	90	0	75	15	19	31	33	1.93
37953--37990	2	19.0	2	100	0	76	50	0	0	50	1.00
38112--38209	32	3.1	32	100	0	196	34	18	15	31	1.92
40681--40801	42	2.9	42	92	2	199	37	8	19	35	1.81
41136--41417	84	3.3	84	91	4	458	38	23	5	31	1.78
41117--41417	85	3.5	85	90	5	473	37	23	5	32	1.79
41519--41575	23	2.5	23	97	0	105	40	7	15	36	1.75
48012--48076	31	2.1	31	82	0	76	35	23	16	24	1.95
49414--49443	15	2.1	15	93	6	53	73	0	26	0	0.84
49408--49442	17	2.0	17	88	5	52	68	0	28	2	1.04
53446--53526	29	2.8	29	96	3	146	17	22	16	44	1.86
53905--54059	64	2.4	64	78	10	165	25	18	19	36	1.95
60843--60923	29	2.8	29	94	3	137	18	22	14	44	1.86
67170--67286	60	2.0	60	84	3	155	22	23	26	27	2.00
68183--68221	19	1.9	19	85	10	51	64	2	0	33	1.08
69747--69780	7	4.9	7	88	0	50	44	2	2	50	1.32
78270--78336	26	2.7	24	86	8	98	28	14	8	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78274--78336	24	2.5	25	89	7	101	26	15	9	47	1.76
78361--78541	60	3.0	61	81	6	192	35	13	3	46	1.60
78453--78541	29	3.0	29	67	12	72	34	16	3	44	1.65
81715--81755	21	2.0	21	100	0	82	21	24	14	39	1.91
81754--81809	20	2.8	20	94	0	94	37	16	19	26	1.92
81773--81866	20	4.7	20	85	2	100	30	22	21	25	1.98
82428--82495	20	3.5	20	85	2	93	11	14	23	50	1.76
84211--84264	24	2.2	24	93	0	90	40	20	18	20	1.91
85078--85165	20	4.4	20	88	0	122	25	21	26	27	1.99
85181--85220	21	1.9	21	94	0	71	35	20	27	17	1.95
85174--85226	21	2.5	21	84	0	70	32	20	26	20	1.98
94029--94142	60	1.9	59	81	1	138	35	18	3	42	1.68

Tables:   1

The End!