genome.fa.s2271.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002271.1 Hibiscus syriacus cultivar Beakdansim tig00004617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140144

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1276--1327	23	2.3	23	90	3	79	30	23	23	23	1.99
1321--1369	21	2.3	21	85	0	62	34	28	12	24	1.91
1826--2002	55	3.2	55	86	1	248	31	21	17	29	1.96
1960--2037	35	2.2	35	95	0	138	30	15	23	30	1.95
2238--2291	26	2.0	27	96	3	101	38	29	0	31	1.57
4380--4530	39	3.9	39	98	0	284	49	9	22	18	1.75
5264--5317	25	2.2	25	96	0	99	25	27	16	29	1.97
17345--17570	119	1.9	114	92	4	380	25	17	19	37	1.94
21214--21287	21	3.5	21	92	0	121	21	24	17	36	1.95
21185--21287	42	2.5	42	80	4	111	22	25	17	34	1.95
21309--21382	20	3.7	20	92	0	121	29	25	17	27	1.97
21296--21383	40	2.2	40	85	0	122	30	25	18	26	1.98
22224--22277	24	2.2	24	93	0	90	20	18	20	40	1.91
24709--24797	20	4.4	20	88	2	117	38	25	19	16	1.92
24769--24864	33	2.8	33	88	3	129	43	19	22	13	1.86
24880--24975	34	2.8	34	87	6	140	13	21	19	44	1.85
25081--25118	14	2.7	15	84	12	53	50	18	0	31	1.47
27093--27181	20	4.4	20	92	0	142	38	26	19	15	1.92
27224--27382	20	8.6	20	73	18	121	19	19	20	40	1.91
29252--29322	20	3.5	20	88	0	106	49	22	16	11	1.78
29666--29721	22	2.5	22	85	5	69	23	12	41	23	1.88
29926--30071	20	7.3	20	95	0	256	20	17	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30068--30113	21	2.2	21	84	0	56	39	17	28	15	1.90
33340--33388	6	8.2	6	90	0	62	46	0	53	0	1.00
33340--33388	8	6.1	8	85	0	62	46	0	53	0	1.00
34913--34955	18	2.5	17	85	7	61	25	4	2	67	1.22
35201--35225	2	12.5	2	100	0	50	48	0	0	52	1.00
35396--35471	38	2.1	38	85	9	104	30	5	9	55	1.54
36653--36681	5	5.8	5	100	0	58	17	0	0	82	0.66
38067--38105	8	5.0	8	84	6	53	10	17	12	58	1.61
39294--39333	9	4.3	9	83	3	53	85	5	10	0	0.75
39939--39982	22	2.0	22	91	8	72	38	22	11	27	1.88
40947--41067	36	3.3	36	84	2	161	23	19	14	42	1.87
41046--41202	68	2.4	68	84	5	205	31	22	8	36	1.85
41846--42565	105	6.9	105	93	1	1150	33	26	17	22	1.96
41846--42565	207	3.5	208	90	2	1126	33	26	17	22	1.96
43722--43764	18	2.5	16	81	7	50	23	4	4	67	1.28
44013--44037	2	12.5	2	100	0	50	48	0	0	52	1.00
44198--44273	38	2.1	38	85	9	104	30	5	9	55	1.54
44331--44366	14	2.6	14	90	0	54	16	2	0	80	0.83
44325--44367	9	4.6	9	80	8	50	13	4	0	81	0.84
46666--46765	50	2.0	50	100	0	200	38	14	16	32	1.88
56173--56301	51	2.5	50	86	5	161	19	29	34	17	1.94
56640--56710	31	2.3	31	95	0	115	50	14	2	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56655--56724	31	2.3	31	84	0	86	55	12	2	28	1.51
64766--64826	31	2.0	31	83	3	79	37	14	8	39	1.76
80908--80946	15	2.6	15	87	0	60	46	15	5	33	1.68
82964--83002	13	3.2	13	92	7	64	61	0	0	38	0.96
86948--87286	171	2.0	172	95	0	608	40	13	7	37	1.74
89983--90066	44	1.9	44	100	0	168	28	27	4	39	1.77
89989--90081	44	2.2	43	92	3	152	31	25	4	38	1.75
90666--90698	15	2.3	15	89	5	50	33	12	9	45	1.73
92250--92287	18	2.2	17	90	4	58	44	7	0	47	1.32
93617--93668	8	6.1	8	79	18	52	59	0	0	40	0.97
93615--93661	13	3.7	13	88	2	69	59	0	0	40	0.97
93852--93975	36	3.4	36	85	3	169	17	20	18	42	1.89
104502--104539	18	2.2	17	90	4	58	44	7	0	47	1.32
105525--105572	19	2.5	19	100	0	96	35	18	27	18	1.95
107245--107293	22	2.2	22	100	0	98	20	12	10	57	1.64
109819--109877	29	2.0	29	96	0	109	23	11	13	50	1.74
114461--114519	29	2.0	29	100	0	118	23	13	13	49	1.78
115660--115748	23	3.9	23	95	0	160	4	37	0	58	1.18
115657--115741	36	2.4	36	77	11	88	5	35	0	58	1.22
116206--116248	21	2.0	21	91	8	70	34	4	25	34	1.77
121161--121190	12	2.4	13	88	11	53	60	0	0	40	0.97
121737--121790	22	2.5	22	90	0	90	3	48	31	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122629--122677	25	1.9	26	83	4	64	51	6	2	40	1.38
122644--122797	42	3.9	40	78	12	140	44	5	3	46	1.41
122696--122787	43	2.1	43	86	7	125	43	4	4	47	1.42
122764--122840	25	3.0	25	72	7	73	46	5	2	45	1.39
122783--122812	15	1.9	16	93	6	53	53	6	0	40	1.27
122706--122885	93	2.0	87	87	8	254	44	5	5	45	1.47
122747--122847	27	3.8	25	71	18	80	44	4	3	46	1.43
122799--122979	37	5.0	36	71	12	113	44	6	3	45	1.46
122815--122943	34	3.7	34	77	13	102	45	5	3	44	1.44
122868--123014	71	2.1	71	81	7	165	46	7	3	42	1.48
127275--127316	2	21.5	2	87	4	59	52	2	0	45	1.13
128078--128116	8	4.9	8	100	0	78	38	23	0	38	1.55

Tables:   1

The End!