genome.fa.s2272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002272.1 Hibiscus syriacus cultivar Beakdansim tig00004619_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81524

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82--224	52	2.6	55	80	8	175	28	18	13	39	1.89
941--995	20	2.8	20	88	0	83	21	16	32	29	1.95
980--1108	23	5.7	23	90	3	192	22	16	37	23	1.93
941--1108	69	2.5	67	81	12	213	22	16	36	24	1.94
1324--1373	21	2.4	21	80	3	66	48	6	14	32	1.67
5494--5556	23	2.7	23	92	0	99	38	22	3	36	1.70
5908--5975	23	3.0	23	82	8	93	39	22	4	33	1.74
5318--6261	421	2.2	430	96	2	1755	40	12	7	39	1.72
6264--6328	25	2.6	25	97	0	121	36	12	10	40	1.78
9295--9366	23	3.2	22	88	4	99	38	22	4	34	1.73
8952--9991	429	2.4	430	98	0	2003	38	12	7	41	1.71
9736--9796	23	2.7	23	92	0	95	37	21	4	36	1.75
11384--11458	6	12.5	6	89	0	87	24	33	6	36	1.81
11384--11458	15	5.0	15	85	0	87	24	33	6	36	1.81
11385--11475	12	7.3	12	80	7	74	21	32	7	37	1.82
11384--11462	18	4.6	18	85	9	110	24	32	7	35	1.83
11397--11475	18	4.6	18	82	9	74	20	32	8	37	1.83
12938--14308	199	6.9	199	95	0	2424	30	17	15	36	1.91
14427--14475	19	2.6	19	93	0	80	57	10	2	30	1.43
16270--16335	33	2.0	33	90	0	105	22	48	0	28	1.51
16369--16412	21	2.1	21	91	0	70	15	31	11	40	1.83
18435--18487	24	2.2	24	83	6	63	26	7	13	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18627--18669	20	2.3	18	85	14	61	20	16	11	51	1.75
18632--18678	20	2.4	19	82	10	67	19	17	10	53	1.72
18599--19071	181	2.6	182	88	1	673	26	16	13	43	1.85
20083--20220	60	2.3	59	85	6	181	32	18	18	30	1.95
22022--22079	23	2.5	23	85	0	80	43	6	15	34	1.74
21994--22156	87	1.9	87	90	2	265	41	10	14	33	1.80
24362--24417	24	2.5	21	76	18	58	51	10	0	37	1.37
26289--26335	20	2.3	20	75	7	51	17	21	12	48	1.79
26263--26912	182	3.6	180	83	2	766	27	16	12	43	1.85
28283--28364	34	2.4	34	78	10	87	63	2	0	34	1.08
28442--28498	19	2.8	19	77	17	62	59	0	0	40	0.97
28436--28659	16	14.6	16	65	20	70	56	0	2	39	1.19
28343--28795	151	3.1	143	82	12	582	56	1	3	39	1.23
28600--28659	18	3.4	18	78	13	63	58	1	1	38	1.18
28630--28696	27	2.3	29	80	7	66	59	0	2	37	1.13
28574--28797	30	7.3	30	67	18	122	57	0	2	39	1.19
28436--28838	151	2.7	156	89	6	623	56	0	3	39	1.22
28729--28801	7	9.4	8	73	23	50	58	1	1	38	1.15
31222--31354	66	2.0	65	80	10	144	30	6	12	51	1.65
34053--34083	15	2.1	15	93	0	53	25	25	22	25	2.00
34034--34104	35	2.0	35	83	0	88	29	30	16	22	1.96
34555--34625	34	2.1	33	86	2	97	32	15	29	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37308--37349	22	2.0	21	85	4	57	26	9	9	54	1.63
37308--37355	22	2.2	22	81	7	53	29	10	8	52	1.65
37573--37661	20	4.7	20	77	13	98	24	28	19	28	1.98
37593--37661	35	2.0	35	88	0	102	24	26	20	28	1.99
38114--38181	34	2.0	33	82	2	82	33	16	26	23	1.95
40480--40528	23	2.1	23	92	0	80	20	12	6	61	1.52
43844--43888	17	2.6	17	82	0	54	48	0	4	46	1.22
43998--44039	18	2.3	18	87	0	66	61	9	0	28	1.27
44814--44841	2	14.0	2	100	0	56	50	0	0	50	1.00
45349--45399	2	25.5	2	100	0	102	50	0	0	49	1.00
48962--48999	19	2.0	20	84	5	51	55	2	0	42	1.14
52508--52534	14	1.9	14	100	0	54	37	0	3	59	1.15
55943--56140	75	2.7	74	79	4	224	26	6	16	51	1.67
56242--56266	12	2.1	12	100	0	50	8	48	16	28	1.74
60968--61253	77	3.8	76	92	1	466	25	22	27	24	2.00
61753--61827	31	2.4	31	80	8	89	21	6	17	54	1.65
67614--67655	21	2.0	21	95	0	75	19	28	35	16	1.93
67684--67726	22	2.0	22	100	0	86	13	27	37	20	1.91
69124--69171	19	2.5	20	82	3	62	29	12	6	52	1.63
70030--70101	34	2.2	33	82	7	83	25	26	15	33	1.95
70447--70525	20	3.8	20	71	11	70	18	25	37	17	1.93
72972--73061	30	2.9	32	77	8	89	54	2	5	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74536--75444	199	4.6	199	79	7	872	34	13	13	39	1.83
81142--81166	3	8.3	3	100	0	50	32	0	32	36	1.58

Tables:   1

The End!