genome.fa.s2275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002275.1 Hibiscus syriacus cultivar Beakdansim tig00004629_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179937

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5259--5327	18	3.7	18	81	7	93	28	30	21	18	1.97
5258--5334	38	2.0	38	89	0	118	29	28	20	20	1.98
12094--12166	18	3.9	18	78	7	83	30	28	20	20	1.98
19576--19762	75	2.5	75	80	3	223	49	14	5	30	1.67
23944--23990	18	2.6	18	77	12	51	34	0	0	65	0.93
26796--26829	17	2.0	16	88	11	50	55	5	20	17	1.62
32184--32341	21	7.8	20	72	7	86	38	25	17	18	1.92
32308--32501	20	9.6	20	80	5	212	35	25	19	19	1.95
32308--32501	60	3.2	60	82	0	244	35	25	19	19	1.95
32884--32954	33	2.2	33	92	0	115	11	22	18	47	1.80
33034--33142	20	5.8	20	76	15	115	44	18	24	11	1.83
33027--33142	33	3.1	36	80	17	139	45	17	25	11	1.81
33093--33149	14	3.7	14	75	20	60	43	22	24	8	1.81
33046--33165	33	3.4	33	87	9	150	45	20	23	10	1.81
33161--33288	19	7.1	19	71	19	87	10	25	18	45	1.82
33183--33239	14	3.7	14	75	20	60	8	24	22	43	1.81
33166--33288	33	3.5	33	88	10	165	10	24	18	46	1.81
33224--33288	21	3.1	21	82	4	96	10	26	15	47	1.78
34981--35449	93	5.1	93	98	0	904	21	12	18	46	1.83
35497--35625	19	7.3	19	75	17	125	45	28	17	8	1.77
35533--35625	33	2.8	32	91	4	150	46	27	18	7	1.76
35497--35625	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35621--35793	19	9.6	19	78	12	168	10	19	23	46	1.81
35643--35699	14	3.7	14	77	20	60	10	21	22	45	1.82
35621--35793	33	4.8	38	82	5	168	10	19	23	46	1.81
37717--37752	14	2.6	14	95	0	63	33	0	22	44	1.53
37859--37936	19	4.4	19	81	15	112	46	17	21	14	1.84
37896--37950	14	3.6	14	73	21	56	45	20	23	10	1.82
37877--37955	33	2.4	33	100	0	158	44	18	24	12	1.85
37945--38147	19	11.7	19	74	20	203	14	21	18	45	1.85
37945--38119	52	3.3	52	97	0	323	14	22	17	45	1.85
37951--38161	33	6.2	33	76	14	223	13	21	18	45	1.84
40435--40459	12	2.1	12	100	0	50	0	28	0	72	0.86
40634--40680	24	2.0	24	87	8	69	38	21	14	25	1.92
41362--41551	20	9.5	20	83	4	204	19	18	25	36	1.95
41538--41620	21	4.0	21	75	6	78	25	15	24	34	1.95
41518--41616	42	2.4	43	77	11	100	21	17	23	38	1.93
41855--41945	28	3.2	28	86	9	123	24	23	20	31	1.98
42729--42763	18	1.9	18	88	0	52	20	31	31	17	1.95
43162--43186	12	2.1	12	100	0	50	64	0	0	36	0.94
48662--48695	16	2.1	17	88	5	52	44	20	0	35	1.52
58069--58121	2	26.5	2	100	0	106	49	0	0	50	1.00
66087--66111	2	12.5	2	100	0	50	48	0	0	52	1.00
68036--68077	20	2.0	20	82	13	50	50	11	2	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68035--68515	183	2.6	181	84	6	614	45	12	13	28	1.81
70965--71095	66	2.0	66	84	0	172	32	3	42	22	1.69
71940--71985	21	2.2	20	85	7	65	21	15	15	47	1.81
74498--74525	14	2.0	14	100	0	56	50	7	28	14	1.69
75828--75876	15	3.1	15	76	5	53	12	28	28	30	1.93
78535--78628	43	2.2	42	96	1	170	15	10	36	37	1.83
81382--81449	3	23.3	3	85	11	97	35	1	0	63	1.04
81382--81449	22	2.9	23	91	6	102	35	1	0	63	1.04
85342--85370	13	2.3	13	94	5	51	24	13	6	55	1.63
88065--88093	8	3.8	8	95	4	51	82	0	17	0	0.66
93519--94233	46	15.6	46	90	1	1098	25	22	18	33	1.97
93519--94233	229	3.1	229	91	2	1107	25	22	18	33	1.97
94034--94110	26	3.2	26	64	21	76	29	23	14	32	1.94
94126--94200	25	3.2	25	65	18	70	24	24	14	37	1.93
98960--99029	23	3.0	23	97	0	131	27	12	11	48	1.75
104338--104379	2	21.0	2	95	0	75	47	2	0	50	1.14
106985--107027	23	1.9	22	90	4	68	25	0	2	72	0.97
109422--109454	16	1.9	17	88	11	50	36	0	3	60	1.12
109415--109456	17	2.4	19	80	15	54	33	0	2	64	1.07
114378--114412	17	2.1	17	100	0	70	22	11	5	60	1.52
120955--121002	21	2.3	21	78	7	53	35	0	4	60	1.16
123149--123459	131	2.4	131	86	2	439	34	11	16	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124292--124349	30	1.9	30	86	6	82	55	10	1	32	1.44
124287--124355	29	2.3	29	75	12	68	52	8	1	37	1.42
125215--125271	31	1.9	30	82	10	73	43	5	1	49	1.35
125304--125328	2	12.5	2	100	0	50	52	0	0	48	1.00
127773--127914	5	28.4	5	100	0	284	40	19	0	40	1.52
130426--130499	15	4.9	15	71	21	55	14	2	6	75	1.12
130426--130615	44	4.2	43	71	21	142	17	6	4	72	1.22
130426--130625	90	2.2	89	75	11	194	18	6	4	72	1.22
132320--132379	28	2.1	28	81	0	66	15	6	26	51	1.67
148992--149027	19	1.9	19	88	5	56	2	8	11	77	1.08
149004--149037	13	2.6	13	86	13	52	0	11	8	79	0.94
151264--151319	24	2.3	23	81	6	58	53	1	3	41	1.29
157391--158384	84	11.9	84	85	1	1107	32	23	18	25	1.97
160703--160765	26	2.5	24	80	15	65	19	1	20	58	1.47
162314--162388	30	2.5	30	85	10	107	44	13	8	34	1.73
164587--164612	2	13.0	2	100	0	52	50	0	0	50	1.00
164672--164703	2	16.0	2	100	0	64	50	0	0	50	1.00
168796--168921	44	3.0	41	70	19	114	31	15	15	37	1.89
168795--168991	86	2.3	85	85	6	256	31	15	15	37	1.88
168796--168929	42	3.1	43	70	18	125	30	14	14	39	1.87
169123--169166	21	2.1	21	91	0	70	52	22	0	25	1.48
173855--173910	24	2.3	24	96	0	103	35	17	21	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176579--176620	20	2.1	20	86	8	59	26	26	11	35	1.91

Tables:   1

The End!