genome.fa.s2277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002277.1 Hibiscus syriacus cultivar Beakdansim tig00004632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171917

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2015--2158	46	3.2	45	89	4	193	25	13	22	38	1.90
11728--11773	13	3.6	12	91	5	56	82	0	15	2	0.76
11728--11773	6	7.2	6	85	9	56	82	0	15	2	0.76
11728--11773	19	2.4	19	89	10	67	82	0	15	2	0.76
11759--11842	26	3.1	27	73	18	68	69	0	20	10	1.18
11726--11809	26	3.3	26	71	15	68	73	0	19	7	1.05
11737--11852	7	15.9	7	74	19	69	72	0	18	9	1.11
11785--11844	19	3.3	19	80	13	72	71	0	18	10	1.13
11745--11850	19	5.2	19	69	27	67	71	0	18	9	1.12
11737--11891	14	10.4	14	68	23	61	72	1	17	9	1.17
13215--13846	51	11.9	53	87	6	611	28	15	27	28	1.97
13230--13879	55	12.2	53	86	6	234	28	16	26	28	1.97
18519--18599	24	3.6	23	75	14	87	28	22	25	23	1.99
18497--18619	44	2.8	42	77	8	120	25	20	27	26	1.99
28337--28382	16	2.9	16	87	6	58	76	0	23	0	0.79
38416--38646	115	2.0	115	100	0	462	22	19	20	37	1.95
47108--47145	17	2.2	18	85	4	51	50	5	5	39	1.48
59775--59819	18	2.5	18	85	0	63	40	2	0	57	1.11
60650--60677	12	2.3	12	100	0	56	60	0	7	32	1.24
74115--74157	21	2.0	21	86	8	61	25	9	0	65	1.22
74989--75037	22	2.2	22	82	7	64	32	30	28	8	1.86
75902--76026	31	4.0	31	89	2	180	20	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76482--76533	21	2.4	21	81	9	52	36	3	13	46	1.62
80382--80491	31	3.5	31	93	0	184	18	19	22	40	1.92
80382--80506	31	4.0	31	89	2	164	20	18	23	38	1.93
80969--81011	21	2.0	21	82	8	52	32	4	13	48	1.63
81865--81923	29	2.0	29	90	0	91	10	15	35	38	1.81
82352--82382	16	1.9	16	93	0	53	48	0	9	41	1.36
82477--82513	19	1.9	19	94	0	65	54	2	8	35	1.44
85132--85213	30	2.7	30	82	0	101	36	9	17	36	1.82
92116--92177	3	21.3	3	93	6	110	30	0	0	69	0.89
92464--92505	19	2.2	20	87	12	61	45	7	0	47	1.30
94416--94467	20	2.6	20	96	0	95	38	26	13	21	1.90
94523--94716	20	9.6	20	76	8	76	35	25	19	19	1.95
94519--94716	40	5.0	39	81	4	200	35	26	19	19	1.95
94523--94715	60	3.2	60	83	0	251	35	25	19	19	1.95
95097--95167	33	2.2	33	92	0	115	11	22	18	47	1.80
95288--95342	14	3.6	14	73	21	56	41	23	25	9	1.83
95288--95358	33	2.2	33	94	0	124	43	25	22	8	1.81
95354--95451	19	5.7	19	70	22	81	10	24	22	42	1.84
95376--95465	14	5.7	14	74	23	81	8	25	23	42	1.83
95359--95473	33	3.5	33	95	0	212	9	24	20	45	1.81
97171--97641	93	5.1	93	97	1	894	22	12	18	46	1.83
97171--97641	184	2.6	185	98	0	908	22	12	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97685--97813	19	7.3	19	75	17	125	45	28	17	8	1.77
97721--97813	33	2.8	32	91	4	150	46	27	18	7	1.76
97685--97813	52	2.5	52	74	14	140	45	28	17	8	1.77
97809--97943	19	7.6	19	75	16	128	11	19	23	45	1.82
97831--97887	14	3.7	14	77	20	60	10	21	22	45	1.82
97814--97906	33	2.8	33	95	0	168	10	20	21	47	1.80
99848--99883	14	2.6	14	95	0	63	33	0	22	44	1.53
99990--100091	19	5.6	19	84	13	151	44	17	23	14	1.86
100120--100374	19	14.4	19	80	16	316	14	20	18	47	1.83
100098--100307	52	3.9	52	83	9	246	15	20	17	46	1.84
100098--100374	90	3.2	90	88	7	389	14	20	18	46	1.84
100082--100374	142	2.1	139	91	5	466	15	20	18	46	1.84
100120--100346	52	4.2	55	91	6	305	14	21	17	47	1.83
100139--100374	33	6.8	33	80	12	201	13	20	18	47	1.83
102658--102682	12	2.1	12	100	0	50	0	28	0	72	0.86
102857--102903	24	2.0	24	87	8	69	38	21	14	25	1.92
103586--103954	20	18.5	20	84	5	433	20	18	25	34	1.96
112773--112797	2	12.5	2	100	0	50	48	0	0	52	1.00
119311--119347	14	2.6	14	91	0	65	48	0	0	51	1.00
121517--121585	29	2.4	29	82	2	86	27	4	14	53	1.59
123223--123267	22	2.0	22	86	4	63	31	33	26	8	1.87
123869--123898	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124842--124932	23	4.0	23	89	0	137	20	29	25	24	1.99
125892--125945	20	2.7	19	83	8	72	14	16	22	46	1.84
127260--127356	42	2.3	42	83	0	122	29	34	17	18	1.94
127467--127522	21	2.7	21	91	0	85	17	12	35	33	1.88
127486--127585	42	2.4	41	73	5	110	23	13	28	36	1.92
127547--127586	21	1.9	21	89	0	62	25	12	25	37	1.91
127691--127724	4	8.5	4	86	0	50	26	0	2	70	1.01
127857--127954	21	4.7	21	86	5	135	21	35	18	24	1.95
127857--127954	42	2.3	42	91	0	151	21	35	18	24	1.95
131429--131940	256	2.0	256	100	0	1024	32	19	9	39	1.84
132394--132427	12	2.8	12	90	0	50	14	0	29	55	1.40
133024--133062	15	2.5	15	83	4	51	66	0	5	28	1.12
133199--133347	20	7.5	19	72	14	79	34	13	24	28	1.93
133221--133347	40	3.2	40	77	11	134	33	13	23	29	1.93
146217--146344	54	2.4	54	90	0	202	25	18	19	35	1.95
146995--147023	14	2.1	14	100	0	58	58	6	20	13	1.58
157526--157560	16	2.2	16	100	0	70	37	20	14	28	1.91
160707--160808	31	3.4	29	70	13	73	44	5	4	45	1.49
165579--165672	20	4.6	20	73	13	84	32	19	11	36	1.88
165597--165753	20	7.8	20	68	9	95	30	22	12	35	1.90
165580--165712	61	2.2	60	79	5	142	33	22	11	33	1.90
165617--165753	40	3.4	41	79	5	145	29	23	13	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165704--165813	40	2.8	40	80	2	114	30	21	10	36	1.88
165746--165813	20	3.4	19	76	15	57	30	23	8	36	1.85
169060--169094	12	2.9	12	86	0	52	57	20	5	17	1.60
169061--169101	18	2.3	18	91	0	64	53	21	4	19	1.63
169344--169382	20	2.0	20	84	0	51	53	17	10	17	1.71
169389--169444	20	2.8	20	94	0	94	16	12	21	50	1.78
170935--171088	21	7.3	21	72	8	82	25	14	36	23	1.93
170945--171061	42	2.8	42	85	0	153	26	14	36	22	1.92
171367--171411	21	2.2	20	84	4	54	42	31	13	13	1.82
171483--171528	21	2.2	21	88	0	65	39	28	15	17	1.90

Tables:   1

The End!