genome.fa.s2278.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002278.1 Hibiscus syriacus cultivar Beakdansim tig00004634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191382

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2650--2715	34	1.9	34	87	6	98	33	4	18	43	1.70
4437--4489	24	2.2	25	81	15	67	43	0	1	54	1.11
4545--4584	17	2.3	18	95	4	73	45	5	0	50	1.23
4554--4593	17	2.6	15	82	17	55	57	2	0	40	1.12
8897--8971	31	2.4	31	88	0	114	26	8	16	49	1.73
9110--9179	25	2.9	23	83	12	79	51	1	4	42	1.30
10086--10126	21	2.0	21	90	0	64	21	26	21	29	1.99
10166--10231	20	3.5	19	76	23	77	25	16	31	25	1.96
10271--10340	36	1.9	37	85	8	99	28	20	27	24	1.99
10553--10591	21	1.9	21	89	5	62	48	10	12	28	1.74
13677--13741	20	3.5	20	72	20	77	26	12	33	27	1.92
15007--15063	29	2.0	29	86	6	80	29	24	7	38	1.82
20854--20894	8	5.2	8	82	5	57	34	0	29	36	1.58
20967--21720	128	5.9	128	95	0	1350	23	25	19	32	1.98
22072--22171	33	3.0	34	83	2	139	39	3	4	54	1.35
22690--22783	21	4.5	21	88	5	127	22	26	32	18	1.97
22787--22834	21	2.3	21	85	0	60	22	12	39	25	1.89
24582--24625	19	2.4	19	81	7	56	54	2	0	43	1.12
24562--24650	32	2.7	32	74	10	81	59	2	0	38	1.10
24597--24668	34	2.1	34	82	10	85	63	5	0	30	1.17
28859--28903	22	2.1	22	84	12	58	48	0	0	51	1.00
31070--31127	16	3.7	15	84	11	80	41	6	25	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31070--31126	7	7.1	8	74	21	57	40	7	26	26	1.81
35818--35880	7	8.1	7	74	19	54	44	4	25	25	1.73
35817--35889	16	4.6	16	89	0	110	43	6	24	24	1.78
35816--35889	32	2.3	32	95	0	130	43	6	25	24	1.79
37013--37155	38	3.6	38	76	15	144	39	1	25	34	1.65
37013--37073	19	3.3	18	68	22	54	39	0	21	39	1.53
37049--37198	45	3.4	43	75	20	143	38	2	27	32	1.68
37013--37211	83	2.4	82	86	5	249	39	1	25	33	1.65
40392--40472	3	27.7	3	79	9	87	38	0	0	61	0.96
40860--40908	20	2.5	20	90	3	82	67	10	22	0	1.20
40874--40904	14	2.2	14	94	0	53	61	9	29	0	1.28
41579--41634	29	1.9	28	85	7	76	42	12	1	42	1.53
42571--42613	18	2.4	18	76	7	52	25	4	2	67	1.22
42608--42645	15	2.8	13	88	11	51	23	5	2	68	1.23
53596--53640	16	2.8	16	83	10	56	28	8	6	55	1.56
54389--55148	83	9.2	83	96	0	1394	27	14	21	37	1.92
55933--56737	112	7.1	112	88	4	1152	37	14	19	28	1.92
55933--56723	228	3.5	228	94	1	1351	37	14	19	28	1.91
55933--56737	340	2.4	337	87	5	1217	37	14	19	28	1.92
57011--57091	15	5.3	15	86	7	94	40	0	0	59	0.98
57027--57081	6	9.7	6	80	11	53	45	0	0	54	0.99
57487--57539	6	8.2	6	76	15	52	58	11	30	0	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57483--57547	20	3.2	20	97	0	121	64	9	26	0	1.23
57483--57543	14	4.5	14	75	8	54	62	9	27	0	1.27
58219--58274	29	1.9	28	85	7	76	42	12	1	42	1.53
62793--62888	32	3.0	32	68	0	93	38	15	17	28	1.91
64752--64794	21	2.0	23	90	9	72	51	0	0	48	1.00
68996--69047	20	2.6	20	87	0	68	32	19	19	28	1.96
85384--85410	2	13.5	2	100	0	54	51	0	0	48	1.00
85486--85543	20	2.7	20	86	10	71	24	22	24	29	1.99
92338--92381	19	2.2	20	88	4	63	18	29	13	38	1.89
96416--96494	37	2.1	37	95	0	140	18	18	20	41	1.90
99350--99389	20	2.0	19	85	9	53	25	7	20	47	1.75
101099--101156	28	2.1	28	96	0	107	43	5	17	34	1.71
103892--103934	17	2.9	14	78	18	50	53	0	0	46	1.00
103892--103936	14	3.0	14	79	17	54	51	0	0	48	1.00
104593--104623	7	4.4	7	100	0	62	74	0	0	25	0.82
105677--105715	19	2.0	21	85	10	55	76	5	12	5	1.11
106202--106261	20	3.1	19	78	4	57	53	1	1	43	1.20
106207--106585	186	2.0	186	93	0	641	42	3	8	45	1.51
112276--112351	2	38.0	2	100	0	152	50	0	0	50	1.00
112512--112549	16	2.5	15	84	16	51	73	0	2	23	0.95
114973--115010	20	1.9	20	88	0	58	57	2	5	34	1.35
118239--118299	27	2.3	27	97	0	113	29	6	34	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119239--119277	19	1.9	19	85	10	51	12	28	0	58	1.34
121718--121967	122	2.0	122	86	1	349	35	14	22	28	1.92
123459--123503	2	22.5	2	90	0	72	51	44	0	4	1.21
132331--132399	31	2.2	32	84	5	88	42	17	11	28	1.84
134027--134067	19	2.2	19	86	8	57	34	0	2	63	1.08
138615--138664	11	4.7	11	85	9	77	18	26	22	34	1.96
138616--138701	10	8.6	10	82	8	54	16	26	26	30	1.97
138610--138664	20	2.7	21	86	10	78	16	23	23	36	1.94
138638--138707	10	7.3	9	78	10	68	15	28	28	27	1.96
138610--138705	19	4.8	20	85	11	83	16	25	27	31	1.97
138703--138741	17	2.3	17	100	0	78	17	46	23	12	1.83
138731--138761	7	4.4	7	100	0	62	16	29	29	25	1.96
145922--145965	9	4.8	9	80	5	52	18	25	29	27	1.98
145931--145969	19	2.1	19	100	0	78	17	25	30	25	1.97
145932--145971	9	4.3	9	84	6	53	15	30	30	25	1.95
145968--146010	22	2.0	22	100	0	86	18	48	23	9	1.76
149724--149791	27	2.5	26	88	9	75	52	13	4	29	1.59
150551--150626	38	2.0	38	97	0	143	25	11	2	60	1.44
175181--175236	24	2.3	24	96	0	103	25	23	16	35	1.94
176438--176587	81	1.8	81	83	7	196	32	17	22	28	1.96
179967--180010	21	2.1	21	86	0	61	25	0	25	50	1.50
180201--180326	39	3.1	40	69	19	107	36	15	15	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180142--180326	82	2.3	81	82	8	227	36	16	14	32	1.89
181176--181261	22	3.9	22	74	8	86	33	20	19	25	1.97
186644--186715	27	2.5	30	80	17	89	36	8	12	43	1.73
188707--188733	6	4.5	6	100	0	54	70	0	0	29	0.88
190601--191379	76	9.9	78	76	14	628	24	18	24	31	1.98
190649--191379	79	9.2	82	79	12	750	24	18	25	31	1.97

Tables:   1

The End!