genome.fa.s228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000228.1 Hibiscus syriacus cultivar Beakdansim tig00000398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62058

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4844--5022	97	1.8	98	83	5	238	43	7	8	41	1.62
6238--6284	10	4.7	10	76	7	51	82	2	6	8	0.90
8299--9164	84	10.5	84	82	4	925	23	19	24	32	1.97
8311--9164	168	5.2	163	84	3	1022	23	20	24	32	1.98
10279--10537	95	2.7	95	87	5	337	31	18	18	32	1.94
13120--13180	27	2.3	26	81	18	72	75	1	4	18	1.06
13213--13252	9	4.6	9	84	3	55	77	2	0	20	0.88
13212--13254	18	2.4	19	84	11	63	76	2	0	20	0.89
13231--13363	30	4.5	29	71	20	100	73	3	8	15	1.19
13232--13311	34	2.2	35	80	10	90	72	2	8	16	1.20
13280--13338	25	2.4	25	88	5	84	76	3	8	11	1.13
13295--13333	20	2.0	20	85	10	53	76	2	7	12	1.09
14683--14717	6	5.8	6	100	0	70	0	82	0	17	0.66
15969--16048	23	3.4	23	81	13	65	42	5	0	52	1.23
15980--16048	25	2.9	23	85	14	95	42	4	0	53	1.20
16224--16295	26	2.8	26	89	0	117	55	4	11	29	1.53
17093--17570	182	2.6	181	89	2	710	43	13	16	27	1.85
19644--19672	15	1.9	15	100	0	58	24	6	55	13	1.63
19757--19800	21	2.1	21	91	0	70	43	11	31	13	1.80
19849--19914	33	2.0	33	90	0	105	30	1	42	25	1.64
20100--20138	18	2.2	18	95	0	69	58	0	41	0	0.98
21756--21824	3	23.0	3	84	0	66	37	7	33	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21756--21820	27	2.4	27	89	0	94	38	7	33	20	1.81
23031--23289	127	2.0	128	87	0	367	41	13	14	30	1.84
23173--23896	200	3.8	179	83	11	854	37	13	16	32	1.88
23352--23896	200	2.7	200	93	0	901	37	13	15	33	1.87
24676--24705	15	2.0	15	100	0	60	40	20	20	20	1.92
25056--25472	211	2.0	211	98	0	807	35	23	12	28	1.91
28161--28863	198	3.5	198	83	6	805	40	14	15	29	1.87
28864--29025	87	1.9	87	88	0	243	35	12	9	41	1.77
28948--28992	23	2.0	23	86	0	63	37	15	8	37	1.79
29078--29113	11	3.3	11	100	0	72	27	11	0	61	1.30
30472--30533	29	2.1	31	87	6	92	50	16	11	22	1.76
30734--30783	23	2.1	24	96	3	93	54	18	20	8	1.68
31157--31212	15	3.6	15	79	9	67	42	12	12	32	1.80
31160--31210	17	3.1	17	77	11	61	43	11	9	35	1.75
31607--31661	13	4.2	13	75	13	58	49	12	3	34	1.59
31647--31739	33	2.8	34	82	8	120	45	15	5	34	1.69
31740--31779	21	1.9	21	94	0	71	47	7	15	30	1.72
36530--36877	191	1.8	194	85	6	492	29	23	23	23	1.99
37353--38062	361	2.0	353	89	3	1073	25	19	17	36	1.94
39894--40028	21	6.5	21	81	7	125	32	21	22	22	1.98
39910--40035	42	3.0	42	82	11	161	32	20	23	23	1.98
39956--40028	20	3.6	20	88	5	94	35	20	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40746--40889	42	3.4	42	87	0	216	36	20	19	22	1.95
40746--40889	21	6.9	19	71	17	99	36	20	19	22	1.95
42174--42244	24	2.9	23	78	14	61	39	2	2	54	1.29
42181--42268	27	3.3	27	79	4	81	38	2	2	56	1.24
42403--42477	31	2.4	31	90	0	105	48	12	8	32	1.69
51982--52118	39	3.5	39	87	2	177	21	31	24	23	1.98
52008--52134	39	3.3	39	88	0	137	22	31	21	25	1.98
51982--52134	78	2.0	78	81	5	184	22	31	22	24	1.98
60762--60816	22	2.5	22	78	0	65	30	9	21	38	1.85

Tables:   1

The End!