Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002280.1 Hibiscus syriacus cultivar Beakdansim tig00004640_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63955

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
799--843
21
2.2
20
84
15
56
26
2
8
62
1.37
1364--1388
13
1.9
13
100
0
50
20
0
0
80
0.72
12458--12601
44
3.2
44
71
11
157
28
28
18
24
1.98
12446--12664
90
2.4
93
90
5
347
27
28
19
24
1.98
21015--21119
45
2.3
46
86
4
142
30
17
17
35
1.93
27679--27839
65
2.5
65
89
5
238
32
21
15
30
1.94
31039--31079
21
2.0
21
95
0
73
46
12
41
0
1.41
34920--34975
22
2.5
22
88
0
76
21
0
7
71
1.09
34959--34992
16
2.2
16
94
5
61
20
0
5
73
1.04
39343--39393
20
2.7
20
79
11
54
56
0
1
41
1.10
39321--39441
64
1.9
62
83
6
154
50
0
5
43
1.26
45294--45336
22
2.0
22
85
0
59
34
25
20
18
1.96
53647--53911
102
2.6
102
84
2
336
32
13
21
32
1.92
54648--54678
8
3.8
8
91
8
53
80
0
9
9
0.90
54580--54651
6
12.0
6
100
0
144
83
0
16
0
0.65
54587--54714
9
14.4
8
72
18
85
80
0
14
3
0.90
56872--57049
36
5.3
36
66
20
123
30
16
14
38
1.88
56903--57013
30
3.5
30
70
17
98
31
15
12
40
1.84
56822--57106
66
4.3
66
90
1
421
29
16
14
38
1.89
56824--57141
66
4.8
66
86
4
205
30
16
14
38
1.89
57057--57290
103
2.3
102
76
11
233
34
17
12
35
1.88
59233--59264
14
2.3
14
94
0
55
21
18
3
56
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60558--60608
23
2.1
25
78
10
61
23
3
3
68
1.23
61995--62037
15
2.8
16
78
7
52
55
13
0
30
1.39
63235--63441
29
7.3
29
82
8
223
33
6
9
51
1.59
63232--63489
29
9.2
29
81
7
196
32
6
8
51
1.58
63446--63537
28
3.3
27
77
7
87
29
10
6
53
1.61

Tables:   1

The End!