Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002281.1 Hibiscus syriacus cultivar Beakdansim tig00004642_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99687

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10388--10426
15
2.6
15
83
0
51
56
7
7
28
1.55
12643--12792
64
2.3
64
80
10
182
35
18
17
29
1.93
13326--13359
15
2.3
15
94
0
59
14
20
32
32
1.93
17316--17354
15
2.6
15
91
0
60
58
7
10
23
1.56
19553--19706
64
2.4
64
78
8
170
35
18
18
27
1.94
20233--20291
15
3.9
15
95
0
109
20
25
25
28
1.99
25672--25696
2
12.5
2
100
0
50
48
0
0
52
1.00
25703--25807
8
13.0
8
74
14
74
19
2
0
77
0.95
25701--25902
4
51.2
4
68
19
52
19
5
1
73
1.11
25682--25834
40
3.8
39
81
10
157
23
3
0
71
1.06
25743--25859
23
4.7
23
70
14
72
17
6
1
74
1.12
25703--25817
20
5.9
18
71
17
79
20
2
0
76
0.96
25852--25912
31
1.9
32
87
9
90
19
6
1
72
1.16
30714--30778
33
2.0
33
96
0
121
41
6
15
36
1.72
37146--37181
19
1.9
19
94
5
65
75
5
0
19
1.00
38424--38493
3
23.7
3
94
2
124
64
0
0
35
0.94
38722--39152
117
3.7
116
87
3
564
29
19
12
38
1.88
38722--39152
233
1.8
232
84
5
593
29
19
12
38
1.88
39129--39304
94
1.9
93
86
2
253
29
17
17
35
1.93
39206--39494
113
2.6
112
95
2
515
28
19
13
38
1.90
40237--40785
82
6.7
82
93
2
892
36
23
12
26
1.91
41548--41593
19
2.6
18
86
10
60
50
13
6
30
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41920--42016
9
11.2
8
73
16
70
3
19
0
77
0.90
41920--42016
17
5.6
17
73
17
74
3
19
0
77
0.90
41945--42015
33
2.2
33
85
10
92
4
16
0
78
0.90
41919--42019
27
3.8
27
78
13
111
2
20
0
76
0.92
53444--53479
19
1.9
19
94
5
65
75
5
0
19
1.00
54230--54270
15
2.8
14
88
7
55
0
21
2
75
0.92
54726--54782
3
19.3
3
92
3
98
64
0
0
35
0.93
55506--55577
31
2.3
31
80
0
72
37
11
8
43
1.71
57593--57884
3
97.3
3
95
0
494
63
3
33
0
1.11
59206--59240
2
17.5
2
93
0
61
51
2
45
0
1.16
59804--59852
20
2.5
20
96
0
89
38
0
2
59
1.09
64475--64530
24
2.3
24
90
0
85
39
14
17
28
1.89
70030--70059
14
2.1
14
93
0
51
30
10
43
16
1.81
71905--72317
205
2.0
205
100
0
826
34
15
16
32
1.91
72300--72337
19
2.0
19
100
0
76
21
36
5
36
1.76
73091--73144
20
2.7
20
100
0
108
24
16
35
24
1.95
73965--74028
30
2.2
29
85
2
83
37
12
15
34
1.85
79546--79609
27
2.4
27
80
15
71
59
6
1
32
1.32
89601--89662
31
2.0
31
87
0
88
29
16
16
38
1.90
90929--90976
23
2.1
23
92
7
80
62
4
4
29
1.32
90934--90982
23
2.1
24
88
3
73
63
4
4
28
1.31

Tables:   1

The End!