Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002282.1 Hibiscus syriacus cultivar Beakdansim tig00004646_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60384

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3052--3630
198
2.9
199
87
5
787
32
15
14
36
1.88
6172--6575
172
2.3
174
86
5
544
29
16
14
40
1.87
13708--13746
16
2.4
16
100
0
78
53
17
0
28
1.44
14007--14073
33
2.0
33
100
0
134
29
26
17
25
1.98
24088--24115
2
14.0
2
100
0
56
50
0
0
50
1.00
24318--24386
3
24.0
3
84
8
90
60
2
0
36
1.11
24337--24386
14
3.5
14
91
2
82
64
2
0
34
1.05
24310--24390
17
4.9
17
78
15
91
62
2
0
34
1.08
24309--24390
20
4.3
19
76
14
89
63
2
0
34
1.08
26221--26295
6
13.0
6
83
8
84
53
0
0
46
1.00
26222--26295
18
4.3
18
88
10
100
54
0
0
45
1.00
26252--26292
15
2.7
15
100
0
82
56
0
0
43
0.99
26222--26308
12
7.2
12
85
0
93
55
0
0
44
0.99
26222--26308
18
4.8
18
83
10
88
55
0
0
44
0.99
26500--27043
45
11.8
45
92
1
730
32
19
22
25
1.97
27713--27791
22
3.6
22
82
0
95
40
12
15
31
1.84
29063--29311
75
3.4
75
80
8
253
27
21
17
33
1.96
32317--32452
72
1.9
72
93
0
236
35
17
19
27
1.95
37465--37599
2
67.5
2
89
0
207
47
2
2
47
1.29
37832--37886
3
19.0
3
85
7
78
65
1
0
32
1.03
37827--37886
23
2.6
23
86
0
93
66
1
0
31
1.01
37836--37894
20
3.1
17
75
20
55
69
1
0
28
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38310--38374
13
5.2
13
68
22
50
60
3
4
32
1.33
39716--39773
3
19.3
3
85
0
80
58
0
0
41
0.98
39976--40662
45
14.8
45
87
5
836
31
19
22
27
1.97
39976--40659
240
2.9
234
87
4
1004
31
19
22
27
1.97
41334--41411
22
3.6
22
80
3
95
43
10
15
30
1.80
42684--42932
75
3.4
75
77
8
235
26
20
17
34
1.95
45938--46072
72
1.9
72
93
0
234
36
16
19
28
1.93
51483--51549
3
23.0
3
83
6
84
62
2
0
34
1.10
51478--51549
29
2.5
29
86
4
101
63
2
0
33
1.08
53355--53394
3
13.3
3
83
0
53
57
0
2
40
1.12
58661--58704
21
2.0
23
82
8
56
54
11
20
13
1.69

Tables:   1

The End!