genome.fa.s2283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002283.1 Hibiscus syriacus cultivar Beakdansim tig00004647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151295

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9449--9481	17	2.0	17	88	5	50	21	3	42	33	1.68
14298--14376	41	1.9	41	97	0	149	17	15	29	37	1.90
18700--18765	31	2.1	32	91	2	107	37	12	30	19	1.88
21124--21149	2	13.0	2	100	0	52	50	0	0	50	1.00
29619--29720	50	2.0	50	90	0	159	43	19	12	24	1.86
31729--31785	24	2.3	25	82	8	64	59	19	19	1	1.46
33200--33239	11	3.3	13	80	13	50	50	2	0	47	1.14
35157--35243	43	2.0	44	84	2	113	28	11	22	36	1.89
42861--43400	112	4.8	112	89	3	786	36	14	19	29	1.91
43687--43740	3	18.7	3	88	7	85	33	0	1	64	1.04
45727--45766	11	3.3	13	80	13	50	50	2	0	47	1.14
45958--46108	77	2.0	77	97	0	284	33	14	11	41	1.81
49008--49106	33	3.0	33	80	1	126	23	12	24	40	1.88
49503--49569	11	5.9	11	79	6	80	23	23	20	31	1.98
49506--49603	23	4.3	23	89	3	146	23	22	20	33	1.97
49517--49584	12	5.8	12	75	6	68	22	22	20	35	1.96
51194--51247	21	2.6	21	87	0	81	22	0	24	53	1.46
51194--51247	7	7.7	7	80	0	54	22	0	24	53	1.46
51194--51247	14	3.9	14	80	0	63	22	0	24	53	1.46
51456--51497	11	3.9	11	87	3	59	16	26	33	23	1.96
51457--51504	5	9.2	5	82	8	51	16	22	33	27	1.96
54360--54389	14	2.1	14	100	0	60	33	26	6	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55947--56042	33	2.9	33	92	1	156	23	14	26	35	1.93
68081--68149	31	2.3	31	79	2	77	46	20	7	26	1.76
68543--68595	27	2.0	25	82	7	61	39	1	1	56	1.21
70162--70238	38	2.0	38	89	0	118	31	24	16	27	1.97
71576--71618	22	2.0	21	86	9	59	27	2	2	67	1.15
75473--75578	42	2.5	42	81	6	108	33	19	19	26	1.96
75699--75800	42	2.5	41	79	3	123	28	23	20	27	1.99
75307--76002	214	3.2	215	89	1	1056	32	19	14	33	1.92
76121--76403	36	7.9	35	86	5	356	20	20	24	34	1.96
81371--81477	21	5.1	21	88	4	146	13	19	20	46	1.83
91710--91737	13	2.2	13	100	0	56	14	7	25	53	1.66
95368--95436	3	24.0	3	78	19	67	66	1	0	31	1.00
95910--95948	6	6.5	6	96	0	60	17	0	53	28	1.44
96469--96498	15	2.0	15	100	0	60	13	20	13	53	1.72
102270--102306	16	2.4	16	82	8	51	29	2	0	67	1.04
104880--104917	17	2.2	17	86	9	51	10	21	42	26	1.85
112067--112106	17	2.4	17	86	0	53	12	20	47	20	1.81
112101--112180	10	8.3	9	77	10	70	28	28	26	16	1.97
126635--126682	20	2.3	21	82	3	62	43	16	16	22	1.87
130988--131049	24	2.7	23	83	14	83	32	0	1	66	1.02
130985--131049	22	2.8	24	82	15	91	33	0	1	64	1.03
130973--131049	22	3.5	22	78	16	70	32	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131604--131637	17	2.0	17	94	0	59	20	11	20	47	1.81
131675--131719	17	2.7	17	86	3	56	31	4	6	57	1.44
131750--131788	19	2.1	19	95	0	69	30	12	5	51	1.62
136903--137023	39	3.0	42	84	7	185	40	19	14	25	1.89
143397--143463	31	2.2	31	94	0	116	31	14	32	20	1.93
145149--145175	5	5.4	5	100	0	54	18	0	0	81	0.69
148817--148862	13	3.6	13	74	14	51	43	0	0	56	0.99
148810--148862	24	2.2	26	83	16	69	39	0	1	58	1.09

Tables:   1

The End!