Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002284.1 Hibiscus syriacus cultivar Beakdansim tig00004648_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59683

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2499--2567
28
2.5
28
97
2
131
31
0
28
39
1.57
2582--2631
26
2.0
25
84
4
64
26
0
30
44
1.55
10022--10064
21
2.0
21
86
0
59
30
27
25
16
1.97
10093--10137
22
2.0
22
86
4
63
28
31
26
13
1.94
11426--11646
103
2.1
103
91
0
361
26
12
24
37
1.90
11655--11722
23
3.0
23
82
8
77
22
26
23
27
1.99
18467--18511
2
23.0
2
88
4
65
48
2
0
48
1.13
18582--18609
14
2.0
14
100
0
56
71
0
14
14
1.15
23007--23119
37
3.1
37
87
7
167
40
12
11
35
1.79
23487--23567
28
3.1
26
77
16
78
25
2
0
71
0.98
23935--23987
21
2.5
22
84
6
74
22
24
18
33
1.97
23973--24067
20
4.8
20
92
2
147
37
22
18
21
1.94
24245--24310
22
3.0
22
90
0
105
24
39
15
21
1.91
24681--24727
20
2.3
20
88
0
67
19
17
25
38
1.92
24695--24749
20
2.8
20
91
0
83
10
16
23
49
1.77
24714--24757
20
2.2
20
87
0
61
13
13
20
52
1.74
26620--26671
20
2.6
20
96
0
95
38
25
19
17
1.93
26710--26758
20
2.5
20
82
0
62
36
24
18
20
1.94
26623--26788
87
1.9
87
91
0
269
43
21
19
16
1.88
27321--27362
21
2.2
19
87
12
59
21
35
19
23
1.96
29022--29117
33
2.9
34
87
3
140
13
21
20
43
1.86
29089--29196
20
5.7
20
76
16
122
17
21
25
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31600--31677
24
3.2
24
92
0
129
38
19
20
21
1.94
32516--32582
20
3.3
20
95
0
116
22
19
26
31
1.98
32569--32621
20
2.7
20
87
0
79
18
18
22
39
1.92
32618--32663
21
2.2
21
88
0
65
39
15
26
19
1.91
32944--32983
17
2.2
19
86
8
57
20
10
0
70
1.16
33904--33940
17
2.2
17
95
0
65
24
13
40
21
1.89
33904--33948
17
2.6
17
89
0
54
24
17
40
17
1.91
36965--37212
95
2.7
96
81
12
294
30
18
18
32
1.95
38369--39395
84
12.4
84
77
5
931
30
24
19
25
1.98
38372--39428
165
6.4
165
78
5
918
31
23
19
25
1.98
38369--39197
249
3.3
249
91
0
1298
31
23
19
25
1.98
38451--39428
414
2.4
418
84
4
1212
31
23
19
25
1.98
39789--39974
37
5.0
37
95
0
336
41
12
11
33
1.80
40355--40410
19
2.9
19
79
10
69
21
1
1
75
0.99
40358--40411
16
3.2
16
76
10
54
22
1
1
74
1.02
40522--40547
2
13.0
2
100
0
52
50
0
0
50
1.00
40594--40618
8
3.1
8
100
0
50
48
12
0
40
1.40
40906--40949
17
2.5
18
85
3
54
13
6
4
75
1.17
51393--51432
18
2.3
18
86
4
55
47
0
5
47
1.24
54040--54092
22
2.4
21
75
9
61
24
11
13
50
1.73
54085--54157
37
2.0
37
88
0
110
30
17
9
42
1.81
54937--54975
17
2.3
17
90
0
60
7
12
7
71
1.29

Tables:   1

The End!