Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002285.1 Hibiscus syriacus cultivar Beakdansim tig00004649_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52828

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10878--10903
13
2.0
13
100
0
52
0
23
61
15
1.33
11964--12007
2
22.0
2
86
9
63
50
2
0
47
1.13
14651--14677
8
3.4
8
100
0
54
77
0
0
22
0.76
16768--17062
136
2.2
136
87
1
412
26
21
18
33
1.96
18827--18931
37
2.8
37
85
0
147
40
13
15
31
1.85
19535--19584
24
2.1
23
85
3
64
26
0
2
72
0.96
19600--19640
11
3.6
11
87
6
55
24
4
4
65
1.32
19648--19676
2
14.5
2
100
0
58
48
0
0
51
1.00
19871--19927
2
28.5
2
100
0
114
49
0
0
50
1.00
20235--20259
13
1.9
13
100
0
50
16
0
4
80
0.87
20222--20300
22
3.6
22
75
18
76
17
2
3
75
1.06
20673--20769
37
2.6
37
88
0
149
40
16
13
29
1.87
21460--21500
11
3.6
11
87
6
55
24
4
4
65
1.32
21973--22020
13
3.6
13
80
2
51
33
2
0
64
1.05
22036--22110
12
6.1
11
74
18
51
16
4
2
77
1.03
22482--22586
37
2.8
37
85
0
147
41
15
12
30
1.84
23138--23245
22
4.9
23
72
21
88
27
5
0
65
1.21
23197--23248
25
2.0
28
88
11
83
28
0
1
69
0.99
23266--23306
11
3.6
11
87
6
55
24
4
4
65
1.32
24283--24379
37
2.6
37
88
0
149
40
16
13
29
1.87
24936--25043
22
4.9
23
72
21
88
27
5
0
65
1.21
24995--25046
25
2.0
28
88
11
83
28
0
1
69
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25064--25093
12
2.6
11
94
5
51
23
6
6
63
1.43
25318--25352
2
17.5
2
100
0
70
48
0
0
51
1.00
26093--26197
37
2.8
37
88
0
156
40
15
15
29
1.88
26880--26909
12
2.6
11
94
5
51
23
6
6
63
1.43
26910--26994
2
42.5
2
100
0
170
49
0
0
50
1.00
26982--27315
171
2.0
171
92
4
568
30
5
5
58
1.42
27361--27395
2
17.5
2
100
0
70
48
0
0
51
1.00
28136--28232
37
2.6
37
88
0
149
40
16
13
29
1.87
28855--28906
25
2.0
28
88
11
83
28
0
1
69
0.99
28924--28964
11
3.6
11
87
6
55
24
4
4
65
1.32
29570--29644
40
1.9
38
81
10
89
16
14
2
66
1.36
34158--34209
16
3.3
15
82
15
61
80
5
13
0
0.88
34829--34905
22
3.5
22
90
0
127
38
27
12
20
1.89
35629--36607
106
9.3
106
88
2
1384
33
24
18
23
1.97
37338--37434
37
2.6
37
91
0
158
41
16
9
32
1.80
38000--38108
15
7.3
15
65
22
52
28
5
0
65
1.21
38063--38110
24
2.0
25
87
4
71
29
0
2
68
1.01
38129--38169
11
3.6
11
87
6
55
24
4
4
65
1.32
38619--38768
27
5.5
27
68
23
73
24
4
2
68
1.20
38679--38746
25
2.7
25
72
20
61
20
2
2
73
1.09
38676--38761
12
7.0
12
74
16
52
20
3
2
73
1.10
38792--38849
29
2.0
30
82
3
73
27
10
0
62
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41875--42158
122
2.3
122
95
0
514
29
11
23
35
1.90
43713--43756
19
2.2
20
96
4
81
20
27
27
25
1.99
52119--52161
21
2.1
20
83
12
52
32
2
2
62
1.20
52146--52204
26
2.2
27
78
3
66
23
3
3
69
1.19
52695--52757
11
5.6
11
83
14
76
34
0
1
63
1.04
52695--52759
3
23.0
3
80
12
75
35
0
1
63
1.04
52695--52759
14
4.4
14
83
9
76
35
0
1
63
1.04
52691--52742
20
2.7
20
91
5
81
32
0
0
67
0.91
52701--52761
17
3.8
16
79
10
63
36
0
1
62
1.05

Tables:   1

The End!