genome.fa.s2286.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002286.1 Hibiscus syriacus cultivar Beakdansim tig00004650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59960

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2540--2624	12	7.3	11	70	17	55	20	14	17	48	1.81
2537--2632	24	4.0	24	78	8	90	21	12	17	47	1.81
3832--3876	2	22.5	2	100	0	90	51	0	0	48	1.00
4692--4732	18	2.3	18	86	0	55	17	46	19	17	1.85
7207--7275	12	5.9	11	73	11	57	21	10	17	50	1.75
7183--7275	47	2.0	48	85	10	129	21	12	17	48	1.80
7204--7275	24	3.0	23	86	6	99	22	9	18	50	1.76
15802--15869	27	2.6	27	95	4	122	30	11	16	41	1.84
19565--19625	27	2.3	27	97	0	113	31	11	16	40	1.84
19961--20461	253	2.0	254	93	2	864	28	15	16	39	1.89
31294--31334	6	6.8	6	97	0	73	48	17	2	31	1.60
31335--31496	2	81.5	2	98	1	317	50	49	0	0	1.00
31647--31729	25	3.3	25	98	0	157	39	15	1	43	1.55
35104--35401	41	7.3	41	85	2	357	35	21	11	32	1.88
35104--35401	123	2.4	123	86	3	395	35	21	11	32	1.88
35066--35403	41	8.2	41	84	4	315	36	20	10	32	1.87
35064--35402	82	4.1	81	84	2	376	36	20	10	32	1.87
35180--35456	123	2.3	123	83	1	340	37	20	9	32	1.85
36493--36581	23	4.0	23	79	5	92	37	24	20	17	1.94
36495--36581	44	2.0	44	86	0	120	35	25	20	18	1.95
36513--36666	44	3.6	44	76	8	138	36	24	17	22	1.95
36518--36666	21	7.0	21	74	4	118	35	24	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38096--38138	24	1.9	22	86	13	61	13	23	0	62	1.31
38481--38819	43	7.9	43	92	0	543	28	19	27	25	1.98
39958--40000	19	2.1	20	83	12	52	55	4	11	27	1.55
42868--42996	41	3.1	41	72	14	97	28	20	19	31	1.97
42634--43019	82	4.7	82	78	2	414	28	19	18	33	1.95
42703--43028	163	2.0	165	88	1	494	30	19	17	33	1.95
42738--43073	163	2.1	164	82	2	417	31	19	17	31	1.95
53263--53365	23	4.7	23	84	4	124	24	29	21	25	1.99
55651--55827	64	2.8	63	81	4	196	32	19	21	25	1.97
55666--55827	63	2.5	64	84	3	202	30	19	22	27	1.98
55815--55872	20	2.6	22	86	10	75	29	20	24	25	1.99
56744--56782	20	1.9	21	94	5	71	17	17	25	38	1.92

Tables:   1

The End!