Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002288.1 Hibiscus syriacus cultivar Beakdansim tig00004655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58307

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1806--2167
93
4.0
92
93
6
632
35
8
11
44
1.71
3872--3919
3
16.0
3
100
0
96
33
0
0
66
0.92
8173--8216
21
2.1
21
82
0
52
29
25
22
22
1.99
9835--9869
15
2.3
15
90
0
52
68
0
2
28
1.04
10591--10696
39
2.7
39
88
4
153
44
10
13
32
1.77
10938--11013
10
6.9
10
75
16
62
13
13
14
59
1.62
10946--11031
37
2.4
34
80
17
111
12
12
15
59
1.62
10958--11031
37
1.9
39
91
5
125
12
12
14
60
1.58
19974--20035
18
3.4
18
80
8
72
32
40
1
25
1.66
20005--20035
12
2.6
12
94
0
53
32
41
0
25
1.56
25894--25934
20
2.0
20
95
0
73
19
26
14
39
1.90
26978--27066
33
2.7
33
85
3
117
37
22
23
16
1.94
30738--30762
13
1.9
13
100
0
50
32
8
40
20
1.81
32020--32065
19
2.4
19
88
3
65
56
19
0
23
1.42
32020--32068
4
12.5
4
86
4
73
55
20
0
24
1.44
32441--32506
18
3.6
18
82
8
87
30
28
21
19
1.98
33471--33564
2
46.0
2
91
4
152
47
2
1
48
1.20
33929--34053
64
1.9
65
84
9
166
22
18
20
39
1.93
37777--37849
18
3.9
18
82
7
92
28
31
19
20
1.97
37776--37872
20
5.1
20
79
8
103
26
28
19
24
1.99
37775--37869
38
2.5
37
81
13
129
26
29
18
25
1.98
40101--40309
105
2.0
105
100
0
418
33
9
20
36
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42285--42329
21
2.1
21
84
8
56
28
20
15
35
1.93
42311--42346
16
2.2
16
90
0
54
30
22
13
33
1.93
44863--44896
16
2.1
17
88
5
52
38
2
17
41
1.65
48628--48690
29
2.2
29
91
0
99
22
23
28
25
1.99
49248--49445
21
9.5
21
78
11
203
30
23
21
24
1.99
49265--49445
41
4.3
43
74
16
159
31
22
21
24
1.98
49248--49445
83
2.4
83
83
8
242
30
23
21
24
1.99
49285--49446
62
2.6
61
95
2
288
30
21
22
25
1.98
49454--49494
21
2.0
21
95
0
73
24
21
21
31
1.98
50211--50355
21
6.8
21
78
13
163
37
22
20
20
1.95
50211--50355
63
2.3
63
93
2
245
37
22
20
20
1.95
50789--50819
15
2.0
16
93
6
55
19
19
16
45
1.86
51887--51918
15
2.1
15
94
0
55
53
15
25
6
1.65
55210--55240
15
2.1
15
100
0
62
12
19
19
48
1.81

Tables:   1

The End!