genome.fa.s2289.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002289.1 Hibiscus syriacus cultivar Beakdansim tig00004656_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69059

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932--1984	12	4.4	12	82	15	65	32	0	5	62	1.19
1921--2000	25	3.2	25	89	5	108	31	2	5	61	1.31
1935--2011	25	3.0	25	83	10	86	33	2	3	59	1.29
4684--4732	20	2.4	21	86	3	73	16	20	10	53	1.72
4688--4759	28	2.6	29	78	10	78	19	18	12	50	1.78
6073--6210	9	14.1	9	69	17	80	78	2	14	4	1.03
6073--6209	8	17.1	8	66	18	63	78	2	14	4	1.03
6098--6219	42	3.0	40	79	13	115	77	2	14	5	1.07
6139--6215	19	3.9	20	74	12	70	77	2	16	2	0.99
6056--6207	23	6.3	23	71	20	82	76	2	15	5	1.08
6098--6217	17	7.2	17	69	15	81	77	2	15	5	1.04
6075--6217	10	14.3	10	68	12	64	78	2	13	4	1.03
6853--6929	28	2.7	29	82	9	88	35	27	7	29	1.85
8173--8533	54	6.7	54	80	4	395	32	9	15	42	1.80
8173--8533	109	3.3	109	81	5	419	32	9	15	42	1.80
8623--8694	20	3.5	20	75	3	72	29	25	18	27	1.98
8574--8687	42	2.7	41	82	9	133	28	18	22	30	1.97
8623--8703	41	2.0	41	85	0	108	29	22	20	27	1.99
8700--8808	52	2.1	52	86	6	148	30	8	19	42	1.80
8709--8835	55	2.4	54	81	9	143	33	7	18	39	1.80
9541--10311	136	5.6	132	81	7	776	34	18	22	24	1.96
9542--10311	275	2.8	275	89	2	1133	34	18	22	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11428--11480	12	4.4	12	77	15	56	32	1	5	60	1.31
11423--11496	25	2.9	25	86	6	96	31	2	5	60	1.33
11437--11516	25	3.2	26	78	13	71	36	5	2	56	1.35
12735--12772	16	2.4	16	95	0	67	28	0	10	60	1.30
15926--15968	22	2.0	22	95	0	77	23	39	13	23	1.90
17973--18022	21	2.4	21	89	0	82	18	16	32	34	1.92
18445--18520	21	3.6	21	71	13	66	25	34	21	19	1.96
19893--20029	66	2.2	62	83	7	161	32	1	16	50	1.54
20115--20157	20	2.2	20	100	0	86	13	18	25	41	1.88
20331--20417	39	2.2	39	95	0	156	18	13	20	47	1.83
20665--20715	11	4.4	11	76	13	57	45	13	9	31	1.76
20676--20731	25	2.2	25	93	0	94	42	21	8	26	1.82
20866--20915	20	2.5	20	80	0	64	14	18	24	44	1.86
20924--20969	17	2.7	17	100	0	92	50	19	8	21	1.75
23508--23567	24	2.5	24	83	0	84	38	18	18	25	1.93
24447--24545	19	5.1	19	95	3	162	30	11	21	37	1.88
24512--24599	20	4.3	20	80	1	95	18	13	26	42	1.87
24474--24620	40	3.7	41	81	10	157	23	13	23	39	1.90
24615--24661	21	2.2	21	84	0	67	38	14	25	21	1.92
28508--28724	88	2.5	88	94	3	381	36	23	6	33	1.80
29184--29211	8	3.5	8	100	0	56	39	0	39	21	1.54
30506--30560	7	7.1	7	82	13	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30507--30558	25	2.2	25	83	10	65	67	0	0	32	0.91
30805--30890	29	3.0	29	94	0	145	43	8	8	40	1.64
32747--32822	35	2.2	35	92	0	125	39	23	1	35	1.63
33219--33465	129	1.9	130	92	0	415	36	15	12	35	1.86
33457--33483	13	2.1	13	100	0	54	48	14	14	22	1.81
33806--33868	28	2.3	27	78	8	63	46	1	3	49	1.27
33948--33981	16	2.0	18	88	11	54	64	5	2	26	1.30
34757--34794	18	2.0	20	90	10	62	44	0	2	52	1.14
34870--34949	20	4.4	20	75	23	95	45	10	5	40	1.60
34862--34931	32	2.2	32	97	0	131	45	8	4	41	1.54
35468--35502	12	2.9	12	91	0	52	0	31	17	51	1.45
42703--42923	110	2.0	111	90	0	354	38	8	7	46	1.62
44427--44466	18	2.2	18	100	0	80	30	32	17	20	1.95
44955--45027	25	3.0	24	68	24	62	26	6	4	63	1.38
47947--48070	51	2.5	51	85	1	160	19	31	33	15	1.93
49269--49318	23	2.2	23	88	0	73	38	20	6	36	1.77
48868--50640	489	3.7	466	91	5	2805	40	10	7	41	1.68
49736--49808	23	3.2	23	96	0	128	39	20	4	35	1.72
50225--50297	23	3.2	23	92	0	119	39	21	4	34	1.73
53129--54068	183	5.1	183	95	0	1652	33	16	14	35	1.90
55278--55361	6	14.0	6	83	0	69	21	33	8	36	1.83
55279--55365	12	7.2	12	86	0	102	20	33	9	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55297--55378	12	6.8	12	87	0	110	18	32	9	39	1.83
55297--55378	18	4.6	18	84	0	110	18	32	9	39	1.83
55297--55365	6	11.5	6	82	0	84	18	33	10	37	1.85
56873--58038	200	5.8	200	94	0	2003	30	17	15	36	1.91
56873--58038	401	2.9	401	95	0	2059	30	17	15	36	1.91
59903--59968	33	2.0	33	90	0	105	22	48	0	28	1.51
60002--60066	21	3.1	21	93	0	103	16	30	10	41	1.83
62282--62324	20	2.3	18	85	14	61	20	16	11	51	1.75
62287--62333	20	2.4	19	82	10	67	19	17	10	53	1.72
62468--62515	21	2.3	20	89	6	78	16	16	10	56	1.67
62265--62727	182	2.5	182	89	1	685	26	16	14	43	1.86
65549--65919	94	4.0	94	97	2	705	35	8	10	45	1.70
67615--67663	3	16.0	3	95	4	89	32	0	0	67	0.91

Tables:   1

The End!