genome.fa.s229.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000229.1 Hibiscus syriacus cultivar Beakdansim tig00000399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92728

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770--900	19	7.7	19	67	23	103	42	19	23	13	1.87
770--896	33	3.8	33	90	4	211	42	19	23	14	1.88
771--903	66	2.0	66	98	0	257	41	19	23	15	1.90
927--971	19	2.4	19	84	0	63	15	17	20	46	1.84
1078--1109	14	2.3	14	94	0	55	43	25	0	31	1.55
3795--3850	14	3.6	14	74	21	58	39	23	25	12	1.89
3771--3869	33	3.0	33	93	1	171	39	23	25	12	1.89
3808--3924	52	2.2	52	90	0	189	41	22	23	12	1.88
3746--3924	19	10.1	19	72	19	127	42	20	24	12	1.87
3920--3990	19	3.7	19	86	1	97	11	15	23	49	1.77
4489--4537	20	2.5	20	89	0	80	32	16	20	30	1.94
4524--4740	20	10.6	21	76	8	162	27	19	18	33	1.96
4524--4755	41	5.7	41	74	10	163	28	19	18	32	1.96
4524--4755	61	3.8	60	71	8	189	28	19	18	32	1.96
4607--4671	21	3.1	21	80	4	78	38	18	21	21	1.93
4730--4782	21	2.5	22	78	6	65	35	16	24	22	1.95
13124--13190	24	2.8	24	90	0	107	22	28	25	23	1.99
21047--21265	6	36.5	6	100	0	438	16	0	0	83	0.66
21050--21264	1	215.0	1	67	0	115	16	0	0	83	0.64
25456--25490	17	2.1	17	89	10	54	42	8	0	48	1.33
25683--25716	17	1.9	18	88	5	52	44	2	0	52	1.16
25313--25788	238	2.0	239	85	4	656	46	7	5	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26387--26503	22	5.4	22	84	5	150	36	26	15	21	1.93
26369--26481	43	2.7	43	88	4	158	38	24	15	20	1.92
26406--26565	21	7.6	21	78	10	82	37	26	16	20	1.93
26495--26574	20	4.0	20	85	1	106	40	25	20	15	1.90
26449--26575	21	6.1	21	79	6	109	37	26	17	18	1.92
26791--26830	18	2.2	18	95	0	71	42	10	25	22	1.84
27138--27180	22	1.9	22	85	4	59	51	2	2	44	1.27
29290--29350	20	3.0	20	90	0	95	27	18	29	24	1.98
29573--29630	18	3.0	19	80	14	82	50	5	10	34	1.59
31167--31222	20	2.8	20	91	0	94	10	8	48	32	1.69
32171--32218	20	2.4	20	85	0	60	29	14	29	27	1.95
34110--34174	15	4.5	15	81	14	91	52	0	30	16	1.45
40236--40275	21	1.9	21	89	0	62	42	10	15	32	1.79
49436--49487	24	2.2	24	100	0	104	15	15	15	53	1.73
68483--68619	60	2.3	60	81	0	175	37	13	13	34	1.85
70796--70853	16	3.3	18	72	18	52	31	8	1	58	1.38
75204--75254	25	2.0	26	88	3	77	27	15	21	35	1.94
77985--78057	27	2.7	27	89	0	119	42	15	2	39	1.61
81473--81526	25	2.4	22	80	17	65	29	5	3	61	1.36
83769--83940	40	4.2	41	75	6	127	34	18	17	29	1.94
86077--86285	55	3.8	55	92	1	339	35	10	19	34	1.86

Tables:   1

The End!