Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002291.1 Hibiscus syriacus cultivar Beakdansim tig00004660_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75400

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2374--2426
21
2.5
20
75
16
54
43
11
1
43
1.51
3208--3240
16
2.0
17
88
5
50
33
15
33
18
1.92
3840--3934
46
2.1
46
93
0
163
25
11
16
46
1.81
11357--11407
24
2.1
24
89
7
77
21
23
7
47
1.77
11580--11619
20
2.0
21
85
9
57
37
0
5
57
1.21
13447--13485
19
2.1
19
95
0
69
20
38
15
25
1.92
13433--13595
65
2.5
65
85
3
222
30
26
15
26
1.96
21010--21048
19
2.1
19
95
0
69
20
38
15
25
1.92
20947--21155
65
3.2
64
83
8
212
29
26
17
26
1.97
20996--21158
65
2.5
65
85
3
222
30
26
15
26
1.96
22292--22432
64
2.2
63
81
7
160
31
16
24
27
1.96
22420--22477
20
2.7
20
78
10
62
32
18
20
27
1.97
23237--23288
18
2.9
18
88
0
86
17
19
32
30
1.95
26214--26255
21
2.0
21
95
4
77
28
0
38
33
1.58
29759--29808
21
2.3
23
80
13
61
66
0
0
34
0.92
29683--29901
121
1.8
119
84
7
293
47
7
8
36
1.61
29881--29935
19
2.9
19
73
23
53
67
1
5
25
1.22
31286--31337
3
17.7
3
88
11
81
67
0
0
32
0.91
31675--32035
113
3.3
103
86
7
345
29
18
15
36
1.92
31728--32037
113
2.7
113
92
2
507
30
17
15
36
1.91
31946--32110
73
2.3
73
95
0
294
31
19
16
32
1.94
31833--32223
186
2.1
186
96
0
719
29
19
15
34
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32019--32284
113
2.4
113
94
0
469
27
21
15
36
1.93
31728--32284
299
1.9
299
91
1
911
28
19
15
36
1.93
32696--32750
22
2.5
22
79
5
67
38
12
14
34
1.84
33118--33251
54
2.6
53
85
4
175
29
23
14
32
1.94
33223--33302
40
2.0
40
100
0
160
30
22
15
32
1.94
33266--33369
54
1.9
54
90
0
163
25
22
15
36
1.93
35512--35735
114
2.0
113
88
0
331
29
19
16
34
1.93
37751--37828
31
2.4
33
76
16
83
2
17
0
79
0.84
37753--37803
24
2.1
23
82
13
59
1
17
0
80
0.81
37774--37834
27
2.3
27
83
13
74
3
14
0
81
0.80
37749--37832
21
4.2
20
74
20
77
2
19
0
78
0.86
37755--37838
30
2.9
29
76
16
75
2
17
0
79
0.83
37818--37871
26
2.0
26
92
3
90
3
12
11
72
1.25
37904--37944
8
5.1
8
78
21
50
4
24
0
70
1.06
37903--37944
16
2.6
16
100
0
84
4
26
0
69
1.08
41503--41556
14
3.8
14
85
2
63
51
9
14
24
1.71
43140--43205
20
3.2
20
81
14
64
69
1
0
28
0.97
43792--43841
21
2.3
23
80
13
61
66
0
0
34
0.92
43716--43943
121
1.9
120
82
4
282
46
6
9
37
1.62
45356--45411
3
18.7
3
100
0
112
66
0
0
33
0.92
51885--51911
7
3.9
7
100
0
54
29
25
29
14
1.95
53990--54036
22
2.1
22
96
0
85
31
17
4
46
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56686--56745
24
2.4
25
86
2
77
30
23
23
23
1.99
56750--56793
23
1.9
23
85
0
61
40
25
18
15
1.90
57322--57371
22
2.3
22
100
0
100
20
32
14
34
1.92
59076--59117
20
2.2
20
91
4
68
30
35
26
7
1.83
59153--59191
20
1.9
21
89
5
62
15
35
30
17
1.91
60809--60911
43
2.4
43
81
4
127
28
14
26
31
1.95
66078--66113
11
3.4
11
96
3
65
58
8
25
8
1.55
72858--73475
136
4.6
136
88
2
915
25
22
18
33
1.96
74323--74363
9
4.6
9
87
9
57
7
17
0
75
1.02

Tables:   1

The End!