genome.fa.s2292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002292.1 Hibiscus syriacus cultivar Beakdansim tig00004661_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104116

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4856--4913	6	9.7	6	98	0	107	13	50	1	34	1.52
7972--8027	6	9.3	6	100	0	112	0	16	50	33	1.45
14673--14754	24	3.4	24	98	0	155	36	15	6	41	1.72
15059--15127	34	2.0	34	100	0	138	49	8	0	42	1.34
24732--24776	7	6.4	7	80	10	56	46	35	0	17	1.49
24744--24797	21	2.6	21	82	5	65	46	25	1	25	1.63
30786--30821	2	18.0	2	100	0	72	50	0	0	50	1.00
34465--34609	71	2.0	71	90	6	231	38	17	23	20	1.93
34470--34609	36	3.9	35	86	6	185	37	18	23	20	1.94
34465--34609	72	2.0	72	90	6	233	38	17	23	20	1.93
35487--35557	33	2.2	33	87	2	99	42	25	9	22	1.84
35630--35682	17	2.9	18	75	18	56	56	0	1	41	1.10
35630--35684	18	3.1	19	73	17	55	56	0	1	41	1.10
36225--36322	32	3.1	32	74	11	92	34	28	13	23	1.92
38447--38484	18	2.1	18	85	9	51	44	15	5	34	1.69
40270--40322	23	2.4	22	83	3	61	24	22	24	28	2.00
40834--40894	24	2.5	24	91	0	95	54	26	11	8	1.64
40842--40895	14	4.1	14	77	18	71	51	27	12	7	1.66
55984--56045	20	3.1	20	79	13	65	37	0	0	62	0.95
61208--62386	106	11.3	106	87	5	1553	34	24	18	22	1.96
61202--62386	213	5.7	212	88	4	1640	34	24	18	22	1.96
61842--61994	43	3.4	43	66	18	112	33	27	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61838--62342	105	5.0	94	78	14	499	34	26	18	21	1.96
62837--62881	19	2.3	20	81	14	58	37	0	0	62	0.96
68049--68095	20	2.3	21	78	10	53	36	0	21	42	1.53
73562--73696	63	2.0	65	86	8	184	31	25	15	28	1.96
74843--74879	13	2.8	13	83	0	56	18	45	21	13	1.84
74839--74905	31	2.2	31	89	5	100	17	46	22	13	1.83
74857--74893	18	2.1	18	89	0	56	18	45	24	10	1.81
74874--74933	15	4.3	13	89	4	66	15	38	26	20	1.91
74895--74933	8	5.1	8	87	12	64	12	35	25	25	1.92
74882--74933	15	3.6	15	92	5	81	15	36	25	23	1.93
74894--74934	7	5.6	7	88	11	64	14	34	26	24	1.94
76229--76264	18	2.0	18	88	0	54	52	0	16	30	1.44
77417--77490	23	3.2	23	83	9	96	24	17	21	36	1.95
77423--77497	24	3.2	24	88	1	116	25	17	21	36	1.95
79677--79713	13	2.8	13	83	0	56	18	45	21	13	1.84
79673--79739	31	2.2	31	89	5	100	17	46	22	13	1.83
79691--79727	18	2.1	18	89	0	56	18	45	24	10	1.81
79708--79767	15	4.3	13	89	4	66	15	38	26	20	1.91
79729--79767	8	5.1	8	87	12	64	12	35	25	25	1.92
79716--79767	15	3.6	15	92	5	81	15	36	25	23	1.93
79728--79768	7	5.6	7	88	11	64	14	34	26	24	1.94
81061--81096	18	2.0	18	88	0	54	52	0	16	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82250--82323	23	3.2	23	83	9	96	24	17	21	36	1.95
82256--82330	24	3.2	24	88	1	116	25	17	21	36	1.95
90042--90081	16	2.5	16	87	0	53	40	15	17	27	1.89

Tables:   1

The End!