Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002293.1 Hibiscus syriacus cultivar Beakdansim tig00004663_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74541

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1044--1077
15
2.2
16
89
5
52
17
0
5
76
0.98
4942--4988
2
23.5
2
100
0
94
48
0
0
51
1.00
7759--7790
2
16.5
2
93
6
57
50
0
0
50
1.00
8673--8710
2
19.0
2
100
0
76
50
0
0
50
1.00
17755--17848
31
3.1
32
83
7
106
52
8
2
37
1.44
19373--19397
12
2.1
12
100
0
50
40
8
36
16
1.77
19485--19569
33
2.6
33
84
3
100
9
36
27
27
1.87
19551--19597
14
3.4
14
96
0
85
6
29
40
23
1.79
25955--26006
19
2.7
19
87
3
68
19
25
28
26
1.98
25955--26004
10
5.1
10
74
13
50
20
22
30
28
1.98
26002--26029
14
2.0
14
100
0
56
21
50
21
7
1.72
26000--26059
17
3.4
17
77
8
66
20
45
21
13
1.85
26941--27064
63
2.0
63
81
12
148
16
28
29
25
1.97
33308--33353
14
3.0
15
87
12
67
19
45
21
13
1.84
33307--33361
17
3.4
16
83
16
78
18
43
23
14
1.87
34237--34360
63
2.0
63
81
12
148
16
28
29
25
1.97
37886--37926
9
4.7
9
80
17
50
48
7
7
36
1.59
37888--37924
18
2.1
18
89
0
56
43
8
8
40
1.64
46350--46384
18
1.9
18
88
0
52
31
14
34
20
1.92
46329--46400
30
2.4
30
76
0
72
25
18
37
19
1.94
46452--46550
30
3.3
30
98
0
189
35
25
17
22
1.95
54991--55065
24
3.1
24
90
0
114
30
12
32
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58962--59001
2
20.0
2
100
0
80
50
0
0
50
1.00
61142--61187
17
2.7
17
96
0
83
36
0
23
39
1.55
61869--61962
47
2.0
47
91
0
152
50
7
7
35
1.59
65185--65247
23
3.1
19
79
18
72
53
1
0
44
1.10
65185--65279
43
2.2
43
88
5
140
51
1
0
47
1.07
72748--72772
7
3.6
7
100
0
50
60
0
12
28
1.32

Tables:   1

The End!