Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002294.1 Hibiscus syriacus cultivar Beakdansim tig00004665_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108458

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6160--6217
29
2.0
28
83
3
71
53
8
8
29
1.61
16377--16542
91
1.8
91
93
2
291
43
8
7
40
1.62
29083--29122
2
21.0
2
90
10
66
52
0
0
47
1.00
37257--37298
21
2.1
20
86
8
59
38
16
0
45
1.48
42221--42277
29
1.9
30
89
10
91
36
0
8
54
1.32
43208--43431
53
4.3
54
78
8
230
26
23
26
23
2.00
48785--48847
34
1.9
32
81
12
74
50
1
1
46
1.20
53669--53777
54
2.0
54
96
0
200
42
8
5
44
1.57
54317--54436
32
3.9
31
81
9
129
36
20
15
27
1.93
54317--54436
63
1.9
63
84
1
161
36
20
15
27
1.93
59216--59268
2
26.5
2
100
0
106
50
0
0
49
1.00
60661--61150
135
3.6
135
94
1
813
24
23
18
34
1.96
62109--62167
1
59.0
1
75
0
55
3
8
0
88
0.63
62102--62170
24
2.7
26
82
10
90
4
11
0
84
0.77
62109--62171
27
2.4
28
89
7
96
3
11
0
85
0.70
62109--62167
13
4.5
13
85
6
75
3
8
0
88
0.63
74281--74319
2
19.5
2
100
0
78
51
0
0
48
1.00
77558--77603
23
2.0
23
91
0
74
47
0
0
52
1.00
77669--77723
28
2.0
28
85
7
76
41
10
14
32
1.81
77974--78050
33
2.3
33
93
0
136
37
10
16
35
1.83
80124--80162
21
1.9
20
84
5
51
41
10
12
35
1.77
80469--80516
22
2.2
22
85
3
62
41
6
4
47
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81449--81515
34
2.0
34
90
0
107
31
28
13
26
1.94
83392--83441
22
2.3
22
96
0
91
46
6
14
34
1.69
106387--106481
24
4.0
24
77
2
93
22
11
17
48
1.79
106390--106481
48
1.9
48
86
0
130
21
11
17
48
1.79

Tables:   1

The End!