Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002295.1 Hibiscus syriacus cultivar Beakdansim tig00004667_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69457

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4107--4131
4
6.2
4
100
0
50
76
0
0
24
0.80
14082--14121
21
1.9
21
84
0
53
45
7
0
47
1.31
17721--17763
20
2.1
21
91
4
70
18
23
23
34
1.96
17777--17810
3
11.7
3
93
6
61
64
0
0
35
0.94
17993--18511
218
2.4
219
85
5
719
35
17
15
32
1.91
18459--18560
42
2.4
41
80
4
114
39
18
16
25
1.91
24087--24132
20
2.3
19
85
14
58
50
8
15
26
1.73
30675--30730
2
28.0
2
100
0
112
50
0
0
50
1.00
35100--35247
36
4.1
36
87
3
183
36
21
22
18
1.95
35430--35483
8
6.8
8
73
23
51
38
1
1
57
1.20
35430--35496
13
5.1
13
77
21
68
40
2
1
55
1.24
35436--35505
32
2.2
32
80
10
81
38
2
1
57
1.23
35575--35633
17
3.5
16
82
11
73
25
38
25
10
1.87
36496--36533
19
2.0
19
100
0
76
15
10
42
31
1.81
36811--36870
28
2.1
28
84
6
77
36
0
3
60
1.14
37800--37842
23
1.9
23
85
4
61
44
4
2
48
1.36
38094--38202
48
2.3
47
88
3
157
31
3
19
45
1.67
38094--38226
48
2.8
47
82
6
151
31
3
18
46
1.64
42555--42621
28
2.4
28
95
2
118
13
8
34
43
1.75
43196--43247
18
3.0
17
86
10
70
28
30
5
34
1.81
45143--45173
12
2.5
12
94
5
53
16
3
0
80
0.83
45247--45300
27
2.0
28
85
3
74
37
1
0
61
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48800--49061
95
2.7
95
88
4
348
33
17
19
30
1.95
50347--50463
36
3.2
36
83
1
135
35
16
9
39
1.81
50478--50598
36
3.4
36
82
3
140
29
20
9
39
1.85
50536--50596
15
3.8
15
72
16
50
29
22
9
37
1.87
50519--50575
15
3.1
19
71
23
59
31
19
5
43
1.73
50613--50737
36
3.4
36
80
4
144
26
18
13
41
1.87
50356--50903
137
4.0
137
89
2
760
27
18
12
41
1.86
50752--50873
36
3.4
36
84
3
165
22
18
15
42
1.88
54440--54505
28
2.4
28
97
2
125
30
0
30
39
1.57
54492--54545
28
1.9
28
92
0
90
24
0
31
44
1.54
62016--62058
21
2.0
21
86
0
59
30
27
25
16
1.97
63423--63635
103
2.1
103
92
0
363
25
12
23
38
1.90
63650--63714
23
2.8
23
77
9
71
23
26
21
29
1.99

Tables:   1

The End!