genome.fa.s2297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002297.1 Hibiscus syriacus cultivar Beakdansim tig00004676_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125846

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3059--3123	24	2.7	25	85	4	89	26	18	20	35	1.95
5002--5030	10	2.7	11	89	10	51	72	0	10	17	1.11
10681--10719	13	2.9	14	84	7	53	71	0	5	23	1.05
12122--12216	21	4.6	20	80	13	95	33	22	20	24	1.97
12142--12235	21	4.6	20	79	18	97	35	20	21	23	1.96
12225--12368	21	6.9	21	74	12	109	23	20	22	32	1.98
12142--12298	41	3.8	41	81	9	160	29	20	23	26	1.99
12184--12365	83	2.2	84	84	5	228	25	20	23	31	1.98
13123--13302	21	8.6	21	83	8	224	29	27	21	22	1.99
13123--13302	42	4.3	42	88	3	249	29	27	21	22	1.99
13249--13321	20	3.6	20	82	10	103	35	19	21	23	1.96
13291--13467	62	2.8	61	76	13	182	24	19	25	29	1.98
13286--13453	83	2.0	83	86	6	234	26	20	24	29	1.99
13311--13459	21	7.1	21	81	10	180	23	20	25	30	1.99
15298--15354	10	5.6	10	83	4	69	22	3	5	68	1.25
15309--15354	21	2.2	20	84	3	56	21	4	4	69	1.24
25851--25875	12	2.1	12	100	0	50	40	16	8	36	1.77
26615--26718	51	2.0	51	84	0	136	37	16	12	33	1.86
27831--27883	23	2.3	23	90	0	79	32	1	1	64	1.15
28923--28963	3	13.7	3	85	14	50	73	0	0	26	0.84
29061--29095	5	7.2	5	93	6	63	80	0	0	20	0.72
32526--32564	2	19.5	2	94	0	69	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33115--33595	200	2.4	200	85	2	626	26	20	19	33	1.97
37427--37479	19	2.7	21	85	8	67	73	5	7	13	1.23
37466--37494	5	5.8	5	100	0	58	82	0	0	17	0.66
38689--38762	3	25.0	3	97	2	141	66	0	0	33	0.92
46753--46783	13	2.4	13	100	0	62	35	6	0	58	1.24
49754--49809	4	14.0	4	74	7	51	69	0	1	28	0.98
51092--51131	16	2.4	16	87	8	53	50	5	2	42	1.37
52188--52754	106	5.5	100	89	3	703	22	19	25	32	1.98
52130--52754	212	3.0	208	84	7	790	23	19	25	32	1.98
52129--52746	303	2.0	300	84	6	754	23	19	25	32	1.98
53589--53641	22	2.4	22	96	0	97	26	11	26	35	1.90
54264--54328	11	5.9	11	76	20	57	1	13	4	80	0.95
54264--54335	23	3.5	19	75	17	63	1	13	5	79	0.98
54249--54333	14	6.2	13	68	17	55	2	11	7	78	1.03
54273--54330	30	1.9	31	85	3	82	1	13	3	81	0.91
58726--58765	16	2.4	16	87	8	53	50	5	2	42	1.37
60275--60307	17	1.9	17	88	11	50	27	24	0	48	1.51
62038--62265	110	2.1	110	99	0	447	26	31	13	28	1.93
62616--62699	31	2.7	31	94	0	141	23	30	16	28	1.96
67918--67976	29	2.0	31	86	6	86	30	13	3	52	1.57
68054--68126	31	2.4	31	77	11	87	42	6	8	42	1.61
70685--70739	29	1.9	28	88	3	83	41	3	5	49	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70703--71068	37	10.1	37	76	14	270	43	6	4	45	1.51
70705--71076	75	5.1	74	77	13	321	43	6	4	45	1.51
71641--72584	165	5.7	164	87	3	1317	25	20	23	31	1.98
71643--72584	329	2.9	327	89	1	1409	25	20	23	30	1.98
79061--79115	29	1.9	28	88	3	83	41	3	5	49	1.43
79058--79155	29	3.2	29	72	20	74	41	5	5	47	1.47
79088--79251	65	2.4	65	80	15	174	42	6	4	46	1.50
79079--79363	37	8.0	37	78	15	250	43	6	4	44	1.51
79082--79365	76	4.0	73	77	13	272	44	6	4	44	1.51
79343--79382	20	2.0	20	100	0	80	45	10	10	35	1.71
79688--79715	10	2.8	10	100	0	56	50	0	39	10	1.37
85108--85181	28	2.8	26	82	12	80	47	1	4	47	1.29
85152--85211	22	2.8	21	82	2	75	40	0	6	53	1.27
90808--90918	47	2.5	46	86	5	156	38	9	18	34	1.82
92903--92934	16	2.0	16	93	0	55	46	12	12	28	1.78
93764--93882	6	20.3	6	73	13	79	77	1	15	5	1.03
93768--93882	18	6.6	17	77	6	97	77	1	15	5	1.03
93768--93870	34	2.9	35	79	13	113	76	1	16	4	1.04
93799--93852	22	2.4	23	84	12	76	74	1	18	5	1.11
93769--93883	28	4.3	27	76	20	100	77	1	15	5	1.03
93823--93880	17	3.4	17	81	13	75	75	0	17	6	1.01
97135--97248	47	2.5	44	86	8	151	41	8	19	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103042--103088	20	2.3	20	78	7	51	38	25	6	29	1.81
103890--103994	43	2.4	44	85	7	160	38	22	12	26	1.90
103890--103993	21	4.8	20	73	16	84	38	23	12	25	1.90
110927--110970	16	2.7	15	83	13	52	47	25	13	13	1.79
110957--111062	23	4.8	23	83	11	141	37	25	11	25	1.89
110935--111062	44	3.0	43	87	5	183	38	25	11	24	1.89
114613--114763	45	3.4	45	90	1	223	42	5	21	30	1.76
115226--115269	21	2.0	22	91	4	72	22	27	22	27	1.99
116411--116478	2	34.0	2	100	0	136	50	0	0	50	1.00
116999--117031	2	16.5	2	100	0	66	51	0	0	48	1.00
122722--122781	21	2.7	23	76	12	70	20	18	31	30	1.96
123132--123242	55	2.0	56	96	1	206	36	18	5	39	1.73

Tables:   1

The End!