Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002298.1 Hibiscus syriacus cultivar Beakdansim tig00004677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79604

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4954--5007
17
3.1
17
78
2
63
79
0
9
11
0.93
4957--5014
18
3.3
17
79
15
64
82
0
6
10
0.83
4951--5031
35
2.3
35
80
4
92
76
0
9
13
1.02
6312--7466
53
21.7
53
87
3
1504
30
18
26
24
1.98
6318--7466
213
5.4
209
89
3
1480
30
18
26
24
1.98
6312--7460
478
2.4
478
90
2
1783
30
18
26
24
1.98
7663--7768
3
35.7
3
92
5
180
35
0
0
64
0.94
7809--7833
12
2.1
12
100
0
50
16
16
8
60
1.58
8003--8269
146
1.8
145
84
3
365
34
20
25
19
1.96
9889--9922
17
1.9
18
88
5
52
23
11
32
32
1.91
10682--10716
16
2.2
16
89
0
52
51
0
17
31
1.45
10681--10720
21
1.9
21
85
10
55
52
0
15
32
1.43
10698--10997
30
10.3
29
67
13
123
53
2
6
38
1.38
10698--10836
27
4.9
27
75
7
107
52
0
8
38
1.37
10698--10998
61
5.2
60
68
20
163
53
2
6
37
1.39
10732--10989
31
8.8
30
69
12
112
55
2
4
37
1.35
11477--11528
21
2.5
21
84
6
70
32
11
5
50
1.62
16845--16874
15
1.9
16
93
6
53
80
6
3
10
1.01
21641--21697
29
2.0
29
82
0
69
61
10
5
22
1.48
29964--30048
33
2.5
34
98
1
163
40
0
0
60
0.97
29950--30035
42
2.0
46
84
9
117
40
0
0
59
0.97
32927--32974
25
2.0
25
91
4
80
29
12
16
41
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32935--32988
25
2.2
25
86
0
72
27
12
14
44
1.82
33943--33988
2
23.0
2
100
0
92
50
0
0
50
1.00
34547--34711
76
2.1
75
83
8
204
45
6
3
45
1.43
39413--39446
7
4.9
7
96
0
50
23
14
32
29
1.94
40394--40488
48
2.0
48
85
6
131
28
16
23
31
1.96
42018--42051
17
2.0
17
88
0
50
20
5
2
70
1.21
46422--46488
22
3.1
21
80
17
75
74
1
20
2
1.03
46469--46527
29
2.0
29
86
0
82
77
0
16
5
0.93
48965--49056
37
2.5
37
76
5
96
23
10
18
46
1.80
49720--50263
203
2.7
203
86
2
788
35
19
18
26
1.95
49720--50368
203
3.2
206
80
6
722
34
19
18
27
1.95
52687--52903
29
7.6
29
84
4
264
35
5
20
38
1.76
52686--52895
113
1.8
112
84
6
278
35
5
20
38
1.77
53928--53980
25
2.1
25
85
0
70
26
7
18
47
1.75
60102--60159
29
2.0
29
93
6
100
24
27
25
22
2.00
60168--60300
29
4.6
29
86
1
178
36
4
21
38
1.74
60168--60302
57
2.4
57
84
1
180
35
4
20
39
1.73
61178--61253
31
2.4
31
75
14
75
19
27
27
25
1.99
61130--61253
63
2.0
63
80
6
144
17
26
29
26
1.98
61270--61322
25
2.1
25
82
0
61
28
5
18
47
1.72
65025--65050
2
13.0
2
100
0
52
50
0
0
50
1.00
66290--66321
17
1.9
16
93
6
55
59
0
3
37
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66275--66325
26
2.0
26
81
14
61
58
0
1
39
1.09
66483--66512
16
1.9
15
93
6
51
33
3
0
63
1.11
66474--66535
27
2.4
25
77
17
72
40
1
0
58
1.08
66640--66737
2
49.5
2
97
2
189
50
0
0
50
1.00
67717--67790
15
4.9
15
81
6
78
24
6
25
43
1.79
67723--67790
30
2.3
30
86
0
100
23
5
26
44
1.76
68531--68601
30
2.4
30
97
0
133
29
21
36
12
1.90
72028--72288
129
2.0
129
90
0
414
33
16
23
26
1.96
74146--74229
2
42.5
2
97
2
161
50
0
0
50
1.00
74949--75020
26
2.8
25
82
6
81
38
0
4
56
1.18
74987--75042
17
3.1
18
75
12
53
39
0
0
60
0.97
74962--75040
16
5.0
17
70
27
59
39
0
2
58
1.12
75646--75681
3
12.3
3
94
5
65
33
0
0
66
0.92
76933--76979
19
2.5
20
80
16
55
25
4
4
65
1.29

Tables:   1

The End!