Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000023.1 Hibiscus syriacus cultivar Beakdansim tig00000040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75657

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5090--5390
149
2.0
148
88
1
442
33
18
26
20
1.96
6923--7089
45
3.8
46
80
10
188
33
21
7
37
1.81
9915--9963
12
4.1
13
80
15
52
75
8
14
2
1.12
9912--9951
13
3.2
13
85
3
55
77
7
12
2
1.07
10910--10973
32
2.0
32
87
0
92
26
15
29
28
1.96
11121--11219
37
2.7
36
87
3
144
30
13
11
45
1.78
11215--11353
61
2.3
61
88
4
212
28
7
20
43
1.78
11267--11492
98
2.3
98
89
0
328
30
11
20
37
1.88
11502--11604
42
2.5
41
84
7
127
23
23
23
30
1.99
11983--12050
35
2.0
35
85
2
93
30
20
11
36
1.89
12070--12188
36
3.3
36
88
3
159
31
18
13
36
1.89
12141--12315
66
2.7
66
81
10
198
27
21
12
38
1.90
12282--12565
39
7.5
39
64
10
131
28
17
14
39
1.89
12288--12565
75
3.7
76
84
6
361
28
17
15
38
1.90
12411--12532
36
3.3
36
65
6
100
27
17
15
40
1.89
12852--13183
135
2.6
128
82
7
377
36
15
22
26
1.93
13116--13365
91
2.7
91
89
0
365
39
14
21
24
1.91
14706--14752
24
2.0
24
87
8
69
23
0
2
74
0.93
15957--16034
3
26.7
3
72
14
56
35
5
1
57
1.29
15955--16035
17
5.0
17
73
23
77
35
6
1
56
1.32
22282--22354
20
3.7
20
96
0
128
31
24
26
17
1.97
23454--23507
1
54.0
1
77
0
54
88
0
11
0
0.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23452--23507
8
7.1
8
80
8
62
87
0
12
0
0.54
23450--23505
27
2.0
28
93
3
96
85
0
14
0
0.59
23450--23523
10
7.7
10
82
8
75
83
0
14
1
0.71
23454--23519
22
3.1
21
85
10
82
86
0
12
1
0.64
23454--23523
20
3.5
20
86
7
90
85
0
12
1
0.66
24897--25141
50
4.8
50
85
2
274
37
17
20
24
1.93
26728--26809
42
2.0
42
92
0
137
20
20
21
36
1.95
26978--27058
42
1.9
43
87
2
119
24
19
20
34
1.96
26643--27246
249
2.4
249
91
1
971
31
16
17
35
1.92
27498--27559
3
21.7
3
78
15
60
35
3
1
59
1.23
27496--27560
17
4.0
17
76
23
77
35
4
1
58
1.28
29792--29838
20
2.3
20
85
0
67
63
0
8
27
1.23
38594--38626
9
3.7
9
84
15
50
72
9
6
12
1.26
38593--38635
18
2.3
19
96
4
79
74
9
4
11
1.20
38706--38741
10
3.7
10
85
7
56
75
8
5
11
1.19
38706--38766
19
3.3
19
86
9
81
77
6
6
9
1.13
38593--38843
132
1.9
132
86
4
355
51
8
5
34
1.56
50312--50367
22
2.5
22
97
0
103
26
0
35
37
1.57
51828--51891
24
2.9
21
72
17
58
28
18
21
31
1.97
51789--51891
45
2.3
44
85
11
131
26
21
24
28
1.99
57694--57846
46
3.3
46
88
2
220
33
15
20
30
1.93
57787--58006
63
3.5
63
84
7
309
31
15
22
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58011--58048
20
1.9
20
88
0
58
23
21
26
28
1.99
63081--63122
22
1.9
22
85
0
57
16
16
38
28
1.91
64695--64759
17
3.8
16
72
23
53
66
0
6
27
1.15
66215--66262
23
2.1
23
85
14
64
4
10
6
79
1.05
72768--72800
13
2.5
13
90
9
50
75
0
12
12
1.04
75021--75070
17
3.1
15
78
18
55
58
0
0
42
0.98
75462--75548
43
2.0
43
93
0
147
22
17
22
36
1.94

Tables:   1

The End!