genome.fa.s230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000230.1 Hibiscus syriacus cultivar Beakdansim tig00000400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88005

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3736--3912	65	2.8	65	81	9	188	28	19	24	28	1.98
4929--4976	21	2.4	19	80	13	51	4	8	8	79	1.06
9944--10328	45	8.6	45	89	1	558	27	23	12	36	1.91
10388--10642	68	3.8	68	90	0	377	29	23	16	30	1.96
10863--11105	58	4.2	58	94	0	423	36	20	11	32	1.88
20205--20415	58	3.6	58	91	0	332	34	19	10	35	1.87
20819--20871	19	2.7	21	80	14	67	20	28	16	33	1.95
24410--24731	45	7.2	45	84	3	400	29	23	11	34	1.91
24407--24731	90	3.6	90	88	0	463	29	24	11	34	1.91
24410--24731	135	2.4	135	89	1	475	29	23	11	34	1.91
24793--25189	68	5.8	68	85	4	508	29	25	15	29	1.96
24829--25189	142	2.6	136	84	6	499	29	26	16	27	1.97
24793--25189	210	1.9	210	87	2	582	29	25	15	29	1.96
25413--25779	58	6.3	58	93	0	628	35	19	11	32	1.88
27273--27311	10	3.8	10	90	6	60	35	20	23	20	1.96
35676--35727	19	2.5	21	84	9	63	28	21	17	32	1.96
39736--39778	20	2.0	21	86	8	61	32	2	2	62	1.20
41516--41593	4	19.0	4	73	12	61	21	5	2	70	1.19
44774--44816	6	6.8	6	79	10	50	18	2	2	76	1.00
44774--44816	13	3.4	13	80	6	52	18	2	2	76	1.00
51921--52046	64	2.0	64	84	3	164	53	11	22	13	1.71
53011--53479	94	5.0	94	98	0	902	34	24	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53153--53408	51	5.3	51	66	14	202	34	25	17	23	1.96
52806--53479	188	3.5	188	94	3	1141	34	24	18	22	1.96
52806--53479	282	2.3	287	93	4	1151	34	24	18	22	1.96
53918--53953	18	2.0	18	94	0	63	44	2	0	52	1.15
62695--62743	17	2.8	18	76	17	57	38	12	12	36	1.80
62712--62770	17	3.5	17	76	17	68	40	10	10	38	1.73
62695--62772	34	2.3	35	88	2	113	39	12	10	37	1.78
65863--65945	16	5.2	16	79	0	94	45	33	14	6	1.69
68070--68215	55	2.7	55	85	2	186	29	18	21	30	1.97
68615--68664	21	2.4	21	86	6	66	40	8	22	30	1.82
68798--68890	21	4.3	20	74	15	80	19	17	27	35	1.94
74824--74967	55	2.6	55	87	0	207	30	18	21	29	1.97
75547--75616	21	3.3	21	75	15	72	22	12	28	35	1.91
75547--75682	21	6.3	21	69	13	62	23	17	25	33	1.96
75618--75667	22	2.2	23	82	3	57	22	26	20	32	1.98
87666--87709	22	2.0	22	81	4	52	45	0	4	50	1.22

Tables:   1

The End!