Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002301.1 Hibiscus syriacus cultivar Beakdansim tig00004685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48598

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2044--2103
25
2.5
24
78
19
63
71
1
8
18
1.19
2017--2132
35
3.4
34
79
13
116
68
0
10
19
1.23
2033--2148
9
12.6
9
68
18
53
68
1
7
21
1.23
2299--2342
22
2.0
22
90
0
70
70
0
6
22
1.11
3959--3989
2
15.5
2
100
0
62
51
0
0
48
1.00
4278--4320
22
1.9
23
85
4
61
37
9
11
41
1.74
4837--4908
23
3.2
23
88
4
110
37
22
5
34
1.77
5307--5379
23
3.2
23
92
0
119
38
21
5
34
1.77
4449--5693
471
2.6
474
92
5
2098
39
10
8
41
1.69
6487--8117
179
9.1
182
91
5
2563
32
17
14
35
1.90
9301--9388
3
29.0
3
74
2
77
22
32
6
37
1.81
9302--9405
12
8.8
12
85
4
113
21
32
7
38
1.82
10885--11813
200
4.7
200
94
1
1627
30
16
15
37
1.90
10885--11819
399
2.3
400
94
1
1630
30
16
15
37
1.90
11920--11980
19
3.3
18
88
2
59
52
11
1
34
1.47
11932--11980
19
2.6
19
96
0
89
55
10
2
32
1.45
13768--13833
33
2.0
33
90
0
105
22
48
0
28
1.51
13867--13931
21
3.1
21
93
0
103
16
30
10
41
1.83
16158--16205
20
2.4
20
82
6
53
22
12
8
56
1.63
16331--16377
20
2.3
20
89
10
78
17
17
10
55
1.69
16117--16588
181
2.6
180
88
1
658
26
16
13
43
1.85
17069--17135
30
2.3
30
87
7
93
37
7
11
43
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22252--22317
21
3.2
20
69
4
60
15
18
25
40
1.89
22412--22451
5
7.4
5
97
2
53
27
52
20
0
1.46
22936--22962
6
4.5
6
100
0
54
0
14
51
33
1.43
23060--23108
19
2.4
21
90
6
75
44
18
14
22
1.85
28897--28942
23
2.0
23
87
8
67
45
19
21
13
1.84
38088--38131
15
2.8
16
79
3
54
31
2
4
61
1.28
38940--39044
35
3.0
35
88
5
149
46
18
3
31
1.66
42330--42361
15
2.1
15
94
0
55
6
25
15
53
1.65

Tables:   1

The End!