genome.fa.s2302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002302.1 Hibiscus syriacus cultivar Beakdansim tig00004689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184125

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4657--4696	20	2.0	21	85	14	57	27	0	22	50	1.50
5475--5517	19	2.1	21	87	8	63	39	0	6	53	1.28
7181--7255	27	2.7	27	87	4	105	33	2	8	56	1.43
12745--12864	59	2.0	59	85	6	163	27	15	25	31	1.95
32580--33189	263	2.3	261	84	5	766	34	16	10	38	1.84
38863--38888	2	13.0	2	100	0	52	50	0	0	50	1.00
40399--40456	2	29.0	2	100	0	116	50	0	0	50	1.00
47208--47359	36	4.0	36	73	15	126	30	26	15	26	1.96
47288--47358	20	3.8	19	78	17	78	28	28	16	26	1.97
47308--47359	16	3.0	16	75	20	59	28	25	15	30	1.96
47707--47779	33	2.2	33	92	2	119	34	13	28	23	1.93
49992--50099	20	5.8	20	70	25	85	24	31	17	26	1.97
49994--50098	36	2.9	36	95	0	183	23	31	17	27	1.97
49994--50082	16	4.9	19	66	27	59	22	32	17	26	1.97
50528--50597	33	2.1	33	83	0	86	34	14	28	22	1.93
56593--56636	23	1.9	23	100	0	88	15	29	22	31	1.95
61970--62011	21	2.0	21	95	0	75	30	14	7	47	1.71
62006--62109	33	3.2	33	95	1	183	30	7	17	44	1.77
65337--65733	204	1.9	206	85	6	547	31	11	7	48	1.68
65918--66372	237	1.9	237	83	4	587	34	18	10	37	1.85
68694--69330	220	2.9	216	87	5	868	34	14	12	39	1.83
68702--69330	73	8.6	74	87	3	842	34	14	12	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71873--71952	2	40.0	2	100	0	160	50	0	0	50	1.00
73310--73443	46	2.9	45	90	4	196	24	18	11	44	1.83
73688--73897	112	1.9	111	83	4	269	33	18	11	36	1.87
73685--73897	55	3.8	57	86	2	263	33	18	11	36	1.86
74214--74351	64	2.2	63	81	12	149	33	24	14	27	1.94
80142--80239	45	2.2	44	82	12	112	31	22	18	27	1.97
83764--84104	57	6.0	57	92	2	580	33	19	12	34	1.90
84438--84485	20	2.4	20	96	0	87	25	37	16	20	1.93
92719--92765	22	2.1	22	96	0	85	48	17	12	21	1.79
92729--92778	22	2.3	22	85	0	64	54	10	14	22	1.69
102117--102169	27	2.0	26	81	3	61	16	28	1	52	1.54
111408--111432	2	12.5	2	100	0	50	0	52	0	48	1.00
122704--122758	21	2.6	21	88	0	74	21	20	27	30	1.98
122751--122800	21	2.4	21	93	0	82	24	12	18	46	1.82
122765--122808	21	2.2	20	88	8	63	29	15	15	38	1.89
123662--123784	42	2.9	42	92	0	210	38	24	17	19	1.93
123715--123840	65	1.9	65	91	0	207	38	22	19	19	1.94
123861--123913	21	2.5	21	90	0	79	16	18	32	32	1.94
124563--124839	40	6.9	40	73	9	174	38	15	20	24	1.92
124533--124773	80	3.0	80	80	2	277	39	17	18	24	1.92
124535--124817	80	3.5	79	78	1	253	39	15	19	25	1.91
124548--124854	120	2.5	119	80	8	327	38	16	20	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129585--129628	20	2.3	19	80	4	52	34	2	20	43	1.64
136229--136268	21	1.9	21	89	0	62	25	40	25	10	1.86
140170--140238	21	3.3	21	77	4	68	20	24	31	23	1.98
140876--140911	17	2.1	17	90	10	56	52	5	0	41	1.24
141842--141905	26	2.5	25	82	14	69	59	6	1	32	1.32
142039--142085	25	1.9	24	87	12	69	61	0	0	38	0.96
143778--143802	2	12.5	2	100	0	50	48	0	0	52	1.00
144182--144219	15	2.4	16	86	8	51	68	5	2	23	1.23
144567--144681	45	2.7	42	78	6	117	35	19	15	29	1.93
150130--150182	19	2.8	19	80	8	63	71	0	11	16	1.13
150297--150351	22	2.4	24	93	6	96	50	10	9	29	1.68
150583--150627	22	2.0	22	95	0	81	51	28	8	11	1.68
150650--150736	41	2.1	42	87	8	126	20	9	32	37	1.84
151928--152081	78	2.0	78	94	0	272	31	21	24	22	1.98
155918--155947	15	2.0	15	100	0	60	20	33	6	40	1.78
156963--157018	27	2.0	28	86	10	80	44	0	0	55	0.99
156953--157019	21	3.7	18	69	21	50	43	0	0	56	0.99
158446--158707	130	2.1	127	89	5	404	36	8	9	45	1.66
158673--158714	19	2.4	18	88	11	61	57	0	0	42	0.99
161297--161338	7	6.0	7	83	10	59	14	16	9	59	1.60
164196--164278	1	83.0	1	70	0	58	85	1	13	0	0.66
164204--164279	13	5.8	13	85	13	95	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164195--164277	26	3.3	26	82	15	111	84	1	14	0	0.69
164195--164279	24	3.3	26	82	11	113	83	1	15	0	0.71
164204--164279	18	4.3	18	80	15	97	84	0	15	0	0.63
166436--166661	114	2.0	114	93	0	389	31	16	21	30	1.95
167611--167789	75	2.4	75	81	6	193	33	17	20	27	1.96
169017--169071	22	2.5	22	93	0	101	34	10	14	40	1.81
169586--169911	167	2.0	167	90	3	514	35	13	11	38	1.82
169914--170404	76	6.5	76	94	0	849	24	19	21	34	1.97
170538--170598	3	20.0	3	83	9	79	37	0	0	62	0.96
172034--172268	128	1.9	125	89	4	364	39	8	9	42	1.68
172234--172275	19	2.4	18	88	11	61	57	0	0	42	0.99
178352--178546	66	2.9	66	86	1	228	30	16	12	40	1.86
178701--179606	139	6.5	138	80	3	858	30	27	16	25	1.97
178702--179606	278	3.3	276	81	2	976	30	27	16	25	1.97
178751--179623	417	2.1	416	85	1	1158	30	27	16	26	1.96
180288--180326	3	12.3	3	89	10	60	33	2	0	64	1.08
182529--182573	22	2.1	21	83	4	54	35	8	6	48	1.61

Tables:   1

The End!