genome.fa.s2303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002303.1 Hibiscus syriacus cultivar Beakdansim tig00004691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105541

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172--432	26	10.7	26	74	17	213	22	22	9	44	1.82
281--360	20	3.7	20	74	18	79	21	26	11	41	1.86
172--667	46	10.6	47	85	6	477	25	23	9	41	1.84
178--384	72	2.8	73	78	14	203	21	24	8	44	1.80
1091--1142	22	2.5	22	81	6	63	32	23	15	28	1.95
1186--1235	20	2.5	20	83	6	57	24	30	16	30	1.96
5100--5889	57	13.9	57	95	0	1377	34	20	11	34	1.88
8567--8961	57	7.0	57	85	3	541	35	19	11	33	1.88
9368--9418	20	2.5	20	78	6	59	19	29	15	35	1.93
10449--10860	81	5.1	81	87	1	556	30	22	12	34	1.91
11214--11293	20	3.7	20	69	18	61	21	26	11	41	1.86
11202--11493	46	6.5	46	83	8	388	21	22	12	44	1.85
11338--11420	37	2.2	37	86	0	112	20	21	13	44	1.85
11292--11466	83	2.1	83	89	2	262	20	21	13	44	1.86
11389--11468	20	3.7	20	75	18	88	18	27	11	42	1.84
11246--11493	129	1.9	129	89	1	381	21	22	12	43	1.85
11502--11720	45	4.9	45	89	2	334	30	24	10	34	1.90
11502--11713	88	2.4	88	91	1	325	30	24	10	33	1.90
11780--11835	17	3.2	17	71	26	53	53	14	3	28	1.57
12260--12313	21	2.6	21	96	0	99	20	20	24	35	1.96
14484--14508	2	12.5	2	100	0	50	52	0	0	48	1.00
15738--15798	29	2.1	29	100	0	122	47	16	6	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28410--28474	24	2.7	24	88	9	89	46	13	16	23	1.83
34795--34839	20	2.2	20	84	7	56	64	0	20	15	1.29
41469--41517	23	2.1	23	85	7	64	57	14	2	26	1.48
42970--42994	2	12.5	2	100	0	50	52	0	0	48	1.00
50856--50940	20	4.2	20	72	11	66	29	21	18	30	1.97
53604--53681	37	2.1	37	95	4	140	32	19	11	37	1.87
57110--57159	23	2.1	24	88	3	75	20	22	22	36	1.96
64999--65061	19	3.3	19	79	0	63	22	14	14	49	1.79
70240--70824	108	5.4	107	81	8	528	28	26	14	30	1.95
70273--70825	163	3.4	160	80	7	546	29	26	13	30	1.95
70240--70847	55	11.2	55	81	6	589	28	26	14	30	1.95
70836--71507	51	12.6	54	80	7	540	22	24	19	33	1.97
70836--71507	110	6.3	108	83	6	612	22	24	19	33	1.97
71738--71893	36	4.3	36	90	0	222	19	19	24	35	1.95
77701--77727	12	2.2	12	100	0	54	59	14	7	18	1.58
86686--86764	29	2.9	26	67	17	61	48	2	3	45	1.34
86736--86777	19	2.0	20	86	13	59	45	2	4	47	1.36
87809--87849	15	2.7	15	85	11	57	39	0	0	60	0.96
87809--87845	8	4.8	8	81	18	51	37	0	0	62	0.96
89519--89637	18	6.7	18	77	11	120	42	12	13	31	1.81
89529--89616	35	2.5	35	92	1	142	43	15	11	29	1.82
89519--89640	53	2.3	52	81	5	138	42	13	13	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96084--96144	19	3.2	20	81	9	74	27	16	31	24	1.96
96154--96223	20	3.5	20	94	0	122	27	20	27	25	1.99
98590--98621	14	2.4	14	90	10	50	37	0	0	62	0.95

Tables:   1

The End!